炭疽芽孢杆菌菌株斯特恩09RA8929的基因组序列草图
Draft Genome Sequence of Bacillus anthracis Strain Sterne 09RA8929.
作者信息
Busch Anne, Elschner Mandy Carolina, Jacob Daniela, Grunow Roland, Tomaso Herbert
机构信息
Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Jena, Germany.
Centre for Biological Threats and Special Pathogens, Robert Koch Institute, Highly Pathogenic Microorganisms (ZBS 2), Berlin, Germany.
出版信息
Microbiol Resour Announc. 2018 Oct 11;7(14). doi: 10.1128/MRA.00972-18. eCollection 2018 Oct.
Abstract
A Bacillus anthracis vaccine strain (Sterne), used as an attenuated laboratory comparative strain, was sequenced and analyzed. A comparison to assemblies of B. anthracis strain Sterne (NZ_CP009541 and NZ_CP009540) was performed. The lack of the pX02 plasmid and pX01 in approximately five copies was confirmed.
摘要
对用作减毒实验室对照菌株的炭疽芽孢杆菌疫苗株（Sterne株）进行了测序和分析。与炭疽芽孢杆菌Sterne株（NZ_CP009541和NZ_CP009540）的组装序列进行了比较。证实该菌株缺失pX02质粒且pX01质粒约缺失五个拷贝。
相似文献
1
Draft Genome Sequence of Bacillus anthracis Strain Sterne 09RA8929.炭疽芽孢杆菌菌株斯特恩09RA8929的基因组序列草图
Microbiol Resour Announc. 2018 Oct 11;7(14). doi: 10.1128/MRA.00972-18. eCollection 2018 Oct.
2
Differential analysis of Bacillus anthracis after pX01 plasmid curing and comprehensive data on Bacillus anthracis infection in macrophages and glial cells.炭疽芽孢杆菌pX01质粒消除后的差异分析以及巨噬细胞和神经胶质细胞中炭疽芽孢杆菌感染的综合数据。
Proteomics. 2007 Oct;7(20):3743-58. doi: 10.1002/pmic.200700338.
3
Non-toxigenic derivatives of the Ames strain of Bacillus anthracis are fully virulent for mice: role of plasmid pX02 and chromosome in strain-dependent virulence.炭疽芽孢杆菌埃姆斯菌株的非产毒衍生物对小鼠具有完全毒性：质粒pX02和染色体在菌株依赖性毒力中的作用。
Microb Pathog. 1993 May;14(5):381-8. doi: 10.1006/mpat.1993.1037.
4
The native virulence plasmid combination affects the segregational stability of a theta-replicating shuttle vector in Bacillus anthracis var. New Hampshire.天然毒力质粒组合影响θ复制穿梭载体在炭疽芽孢杆菌新罕布什尔变种中的分离稳定性。
J Appl Microbiol. 1999 Aug;87(2):270-8. doi: 10.1046/j.1365-2672.1999.00885.x.
5
Draft Genome Assemblies of Phage AP50c-Resistant Derivatives of Bacillus anthracis Sterne Strain 7702 Lacking Plasmid pXO2.炭疽芽孢杆菌斯特恩菌株7702缺乏质粒pXO2的噬菌体AP50c抗性衍生物的基因组草图组装
Microbiol Resour Announc. 2023 Feb 16;12(2):e0131322. doi: 10.1128/mra.01313-22. Epub 2023 Jan 31.
6
Bacillus anthracis virulent plasmid pX02 genes found in large plasmids of two other Bacillus species.炭疽芽孢杆菌的毒性质粒pX02基因在另外两种芽孢杆菌属细菌的大质粒中被发现。
J Clin Microbiol. 2006 Jul;44(7):2367-77. doi: 10.1128/JCM.00154-06.
7
Sequence, assembly and analysis of pX01 and pX02.pX01和pX02的测序、组装与分析
J Appl Microbiol. 1999 Aug;87(2):261-2. doi: 10.1046/j.1365-2672.1999.00883.x.
8
Genomic analysis of three African strains of Bacillus anthracis demonstrates that they are part of the clonal expansion of an exclusively pathogenic bacterium.对三株非洲炭疽芽孢杆菌菌株的基因组分析表明，它们是一种完全致病性细菌克隆扩增的一部分。
New Microbes New Infect. 2014 Nov;2(6):161-9. doi: 10.1002/nmi2.62. Epub 2014 Sep 28.
9
Comparative safety and efficacy against Bacillus anthracis of protective antigen and live vaccines in mice.保护性抗原和活疫苗对小鼠炭疽芽孢杆菌的比较安全性和有效性
Microb Pathog. 1988 Aug;5(2):127-39. doi: 10.1016/0882-4010(88)90015-0.
10
A novel live attenuated anthrax spore vaccine based on an acapsular Bacillus anthracis Sterne strain with mutations in the htrA, lef and cya genes.一种基于无荚膜炭疽芽孢杆菌Sterne菌株的新型减毒活炭疽芽孢疫苗，该菌株的htrA、lef和cya基因发生了突变。
Vaccine. 2017 Oct 20;35(44):6030-6040. doi: 10.1016/j.vaccine.2017.03.033. Epub 2017 Mar 23.
引用本文的文献
1
Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis.使用亲和传播聚类分析鉴定土拉弗朗西斯菌全基因组序列中的细菌进化枝和亚进化枝。
PLoS Negl Trop Dis. 2020 Sep 29;14(9):e0008018. doi: 10.1371/journal.pntd.0008018. eCollection 2020 Sep.
本文引用的文献
1
Comparison of six commercial kits to extract bacterial chromosome and plasmid DNA for MiSeq sequencing.比较六种商业试剂盒提取细菌染色体和质粒 DNA 用于 MiSeq 测序。
Sci Rep. 2016 Jun 17;6:28063. doi: 10.1038/srep28063.
2
Development of a Sterne-Based Complement Fixation Test to Monitor the Humoral Response Induced by Anthrax Vaccines.开发一种基于胸骨的补体结合试验以监测炭疽疫苗诱导的体液反应。
Front Microbiol. 2016 Jan 28;7:19. doi: 10.3389/fmicb.2016.00019. eCollection 2016.
3
Anthrax Pathogenesis.炭疽病发病机制。
Annu Rev Microbiol. 2015;69:185-208. doi: 10.1146/annurev-micro-091014-104523. Epub 2015 Jul 16.
4
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
5
Kraken: ultrafast metagenomic sequence classification using exact alignments.克拉肯：使用精确比对的超快速宏基因组序列分类
Genome Biol. 2014 Mar 3;15(3):R46. doi: 10.1186/gb-2014-15-3-r46.
6
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic：一个集成和可扩展的桌面软件平台，用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
7
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
8
On Anthrax and Anthracaemia in Wool-Sorters, Heifers, and Sheep.关于羊毛分拣工、小母牛和绵羊的炭疽病和炭疽血症
Br Med J. 1880 Oct 23;2(1034):656-7. doi: 10.1136/bmj.2.1034.656.
Zotero 插件