• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

香港一株血培养阳性分离株经直接全基因组测序编译的嗜柠檬酸螺杆菌基因组序列草图

Draft Genome Sequence of Helicobacter cinaedi, Compiled by Direct Whole-Genome Sequencing of a Blood Culture-Positive Isolate in Hong Kong.

作者信息

Chan Wai-Sing, Au Chun-Hang, Leung Henry Chi-Ming, Ho Dona N, Chan Tsun-Leung, Lam Tak-Wah, Ma Edmond Shiu-Kwan, Tang Bone Siu-Fai

机构信息

Department of Pathology, Hong Kong Sanatorium & Hospital, Hong Kong, China.

Department of Computer Science, The University of Hong Kong, Hong Kong, China.

出版信息

Microbiol Resour Announc. 2018 Nov 8;7(18). doi: 10.1128/MRA.01263-18. eCollection 2018 Nov.

DOI:10.1128/MRA.01263-18
PMID:30533780
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6256545/
Abstract

Isolation of Helicobacter cinaedi from a positive blood culture requires prolonged and stringent subculture conditions. Direct whole-genome sequencing (WGS) of a positive blood culture may provide timely treatment-associated genetic information. Here, we report a draft genome sequence of H. cinaedi compiled by direct WGS, which was 1,995,911 bp in length with 39.1% GC content.

摘要

从阳性血培养物中分离嗜柠檬酸弯曲菌需要长时间且严格的传代培养条件。对阳性血培养物进行直接全基因组测序（WGS）可能会提供与治疗相关的及时遗传信息。在此，我们报告了通过直接WGS汇编的嗜柠檬酸弯曲菌基因组草图序列，其长度为1,995,911 bp，GC含量为39.1%。

相似文献

1
Draft Genome Sequence of Helicobacter cinaedi, Compiled by Direct Whole-Genome Sequencing of a Blood Culture-Positive Isolate in Hong Kong.香港一株血培养阳性分离株经直接全基因组测序编译的嗜柠檬酸螺杆菌基因组序列草图
Microbiol Resour Announc. 2018 Nov 8;7(18). doi: 10.1128/MRA.01263-18. eCollection 2018 Nov.
2
Genome Sequencing Verifies Relapsed Infection of .基因组测序证实了……的复发性感染 。 你提供的原文似乎不完整，“of”后面缺少具体内容。
Open Forum Infect Dis. 2019 Apr 25;6(5):ofz200. doi: 10.1093/ofid/ofz200. eCollection 2019 May.
3
[Three Cases of Bacteremia due to Helicobacter cinaedi Infection and the Usefulness of Gene Analysis of Isolated Bacteria].[三例嗜柠檬酸弯曲菌感染所致菌血症及分离菌基因分析的应用价值]
J UOEH. 2015 Dec 1;37(4):293-8. doi: 10.7888/juoeh.37.293.
4
Identification of the major antigenic protein of Helicobacter cinaedi and its immunogenicity in humans with H. cinaedi infections.嗜柠檬酸螺杆菌主要抗原蛋白的鉴定及其在嗜柠檬酸螺杆菌感染患者中的免疫原性
Clin Vaccine Immunol. 2008 Mar;15(3):513-21. doi: 10.1128/CVI.00439-07. Epub 2008 Jan 2.
5
Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines.犬弯曲杆菌新种的提议，该菌先前被鉴定为嗜胨弯曲杆菌，从犬类中分离得到。
Syst Appl Microbiol. 2016 Jul;39(5):307-12. doi: 10.1016/j.syapm.2016.06.004. Epub 2016 Jun 25.
6
[Clinical and bacteriological examination in hospital of Helicobacter cinaedi (H. cinaedi)].[医院内嗜柠檬酸弯曲菌（H. cinaedi）的临床及细菌学检查]
Kansenshogaku Zasshi. 2014 Jul;88(4):417-22. doi: 10.11150/kansenshogakuzasshi.88.417.
7
Multidrug Efflux Systems in Helicobacter cinaedi.卷曲幽门螺杆菌中的多药外排系统。
Antibiotics (Basel). 2012 Nov 21;1(1):29-43. doi: 10.3390/antibiotics1010029.
8
Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.嗜人埃希氏菌中CRISPR位点的多样性与微进化
PLoS One. 2017 Oct 13;12(10):e0186241. doi: 10.1371/journal.pone.0186241. eCollection 2017.
9
First case report of thyroid abscess caused by Helicobacter cinaedi presenting with thyroid storm.首例由弯曲杆菌引起的甲状腺脓肿并甲状腺危象的病例报告。
BMC Infect Dis. 2019 Feb 15;19(1):166. doi: 10.1186/s12879-019-3808-7.
10
A dramatic increase in the positive blood culture rates of Helicobacter cinaedi: the evidence of differential detection abilities between the Bactec and BacT/Alert systems.嗜柠檬酸弯曲杆菌血培养阳性率急剧上升：Bactec和BacT/Alert系统检测能力差异的证据。
Diagn Microbiol Infect Dis. 2015 Nov;83(3):232-3. doi: 10.1016/j.diagmicrobio.2015.07.017. Epub 2015 Jul 26.

本文引用的文献

1
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
MeDuSa: a multi-draft based scaffolder.美杜莎：一种基于多草稿的支架构建工具。
Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
Helicobacter cinaedi and Helicobacter fennelliae transmission in a hospital from 2008 to 2012.2008 年至 2012 年医院中弯曲菌感染和芬奈尔弯曲菌的传播。
J Clin Microbiol. 2013 Jul;51(7):2439-42. doi: 10.1128/JCM.01035-13. Epub 2013 May 8.
6
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
7
Molecular epidemiologic analysis and antimicrobial resistance of Helicobacter cinaedi isolated from seven hospitals in Japan.从日本七家医院分离的弯曲菌的分子流行病学分析和抗菌耐药性。
J Clin Microbiol. 2012 Aug;50(8):2553-60. doi: 10.1128/JCM.06810-11. Epub 2012 May 16.
8
Unipro UGENE: a unified bioinformatics toolkit.Unipro UGENE：一个统一的生物信息学工具包。
Bioinformatics. 2012 Apr 15;28(8):1166-7. doi: 10.1093/bioinformatics/bts091. Epub 2012 Feb 24.