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[大肠杆菌中同义密码子频率的上下文转移特征]

[Characteristics of the context shift in the frequency of synonymic codons in Escherichia coli].

作者信息

Borodovskiĭ M Iu, Shepelev V A, Aleksandrov A A

出版信息

Mol Biol (Mosk). 1988 May-Jun;22(3):767-79.

PMID:3054498
Abstract

We have demonstrated, that coding regions of E. coli DNA exhibit the non-random shifts of codon usage frequency depending both on the type of the 3' nucleotide adjacent to the codon and the degree of gene expression. Analysis of primary data--statistics of tetranucleotide occurrences--was performed by the techniques of contingency tables. The results of the investigation allowed us to suggest that the phenomenon observed is connected with the influence of the 3'-adjacent nucleotide on the level of missens-errors and another types of inaccuracy during translation. The specific advantages of such mutations in the third position of the codon are based on the adaptation of the codon to the 3' context in order to increase the efficiency of translation.

摘要

我们已经证明,大肠杆菌DNA的编码区表现出密码子使用频率的非随机变化,这既取决于与密码子相邻的3'核苷酸的类型,也取决于基因表达的程度。通过列联表技术对原始数据——四核苷酸出现频率的统计数据进行了分析。调查结果使我们能够推测,观察到的现象与3'相邻核苷酸对翻译过程中错义错误水平和其他类型不准确情况的影响有关。密码子第三位这种突变的特定优势基于密码子对3'上下文的适应性,以提高翻译效率。

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