Institute of Chemical Kinetics and Combustion, RAS, Novosibirsk 630090, Russian Federation; Novosibirsk State University, Novosibirsk 630090, Russian Federation.
Department of Chemical Sciences, University of Padova, 35131 Padova, Italy.
Biochim Biophys Acta Biomembr. 2019 Feb 1;1861(2):524-531. doi: 10.1016/j.bbamem.2018.12.006. Epub 2018 Dec 12.
The antimicrobial action of peptides in bacterial membranes is commonly related to their mode of self-assembling which results in pore formation. To optimize peptide antibiotic use for therapeutic purposes, a study on the concentration dependence of self-assembling process is thus desirable. In this work, we investigate this dependence for peptaibol trichogin GA IV (Tric) in the 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) model membrane in the range of peptide concentrations between 0.5 and 3.3 mol%. Pulsed double electron-electron resonance (PELDOR) applied on spin-labeled peptide analogs highlights the onset of peptide dimerization above a critical peptide concentration value, namely ~ 2 mol%. Electron spin echo (ESE) envelope modulation (ESEEM) for DO-hydrated bilayers shows that dimerization is accompanied by peptide re-orientation towards a trans-membrane disposition. For spin-labeled stearic acids (5-DSA) in POPC bilayers, the study of ESE decays and ESEEM in the presence of a deuterated peptide analog indicates that above the critical peptide concentration the 5-DSA molecules are attracted by peptide molecules, forming nanoclusters. As the 5-DSA molecules represent a model for the behavior of fatty acids participating in bacterial membrane homeostasis, such capturing action by Tric may represent an additional mechanism of its antibiotic activity.
肽在细菌膜中的抗菌作用通常与其自组装模式有关,这种自组装模式会导致孔的形成。为了优化肽抗生素的治疗用途,因此需要研究自组装过程的浓度依赖性。在这项工作中,我们研究了浓度在 0.5 到 3.3 mol%之间的范围内,类脂肽三芪菌素 GA IV(Tric)在 1-棕榈酰基-2-油酰基-sn-甘油-3-磷酸胆碱(POPC)模型膜中的这种依赖性。应用于标记肽类似物的脉冲双电子-电子共振(PELDOR)突出了在临界肽浓度值以上,即约 2 mol%时,肽二聚体的起始。对于 DO 水合双层的电子自旋回波(ESE)包络调制(ESEEM),二聚化伴随着肽向跨膜排列的重新取向。对于 POPC 双层中的标记有氘的硬脂酸(5-DSA),在存在氘化肽类似物的情况下研究 ESE 衰减和 ESEEM 表明,在临界肽浓度以上,5-DSA 分子被肽分子吸引,形成纳米簇。由于 5-DSA 分子代表了参与细菌膜动态平衡的脂肪酸的行为模型,因此 Tric 的这种捕获作用可能代表其抗生素活性的另一种机制。