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适用于层析成像的任意类菲涅耳线性平移不变成像系统的相位恢复。

Phase retrieval for arbitrary Fresnel-like linear shift-invariant imaging systems suitable for tomography.

作者信息

Hrivňak Stanislav, Hovan Andrej, Uličný Jozef, Vagovič Patrik

机构信息

Department of Biophysics, Faculty of Science, P. J. Šafárik University, Jesenná 5, 04154 Košice, Slovakia.

European XFEL GmbH, Holzkoppel 4, 22869 Schenefeld, Germany.

出版信息

Biomed Opt Express. 2018 Aug 21;9(9):4390-4400. doi: 10.1364/BOE.9.004390. eCollection 2018 Sep 1.

DOI:10.1364/BOE.9.004390
PMID:30615729
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6157775/
Abstract

We present a generalization of the non-iterative phase retrieval in X-ray phase contrast imaging applicable for an arbitrary linear shift-invariant (LSI) imaging system with a non-negligible amount of free space propagation (termed as Fresnel-like). Our novel approach poses no restrictions on the propagation distance between optical elements of the system. In turn, the requirements are only demanded for the transfer function of the optical elements, which should be approximable by second-order Taylor polynomials. Furthermore, we show that the method can be conveniently used as an initial guess for iterative phase retrieval, resulting in faster convergence. The proposed approach is tested on synthetic and experimentally measured holograms obtained using a Bragg magnifier microscope - a representative of Fresnel-like LSI imaging systems. Finally, the algorithm is applied to a whole micro-tomographic scan of a biological specimen of a tardigrade, revealing morphological details at the spatial resolution of 300 nm - limiting resolution of the actual imaging system.

摘要

我们提出了一种适用于任意线性平移不变(LSI)成像系统的X射线相衬成像中非迭代相位恢复的推广方法,该系统具有不可忽略的自由空间传播量(称为类菲涅耳)。我们的新方法对系统光学元件之间的传播距离没有限制。反过来,只对光学元件的传递函数有要求,该传递函数应由二阶泰勒多项式近似。此外,我们表明该方法可以方便地用作迭代相位恢复的初始猜测,从而实现更快的收敛。所提出的方法在使用布拉格放大镜显微镜(类菲涅耳LSI成像系统的代表)获得的合成全息图和实验测量全息图上进行了测试。最后,该算法应用于缓步动物生物样本的全微断层扫描,以300nm的空间分辨率揭示形态细节——这是实际成像系统的极限分辨率。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/e6d9474f2e19/boe-9-9-4390-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/4e5f8a51e8d0/boe-9-9-4390-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/3de4aca764be/boe-9-9-4390-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/5becb832fbd0/boe-9-9-4390-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/2b23987fcf1a/boe-9-9-4390-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/e6d9474f2e19/boe-9-9-4390-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/4e5f8a51e8d0/boe-9-9-4390-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/3de4aca764be/boe-9-9-4390-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/5becb832fbd0/boe-9-9-4390-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/2b23987fcf1a/boe-9-9-4390-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ae95/6157775/e6d9474f2e19/boe-9-9-4390-g005.jpg

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本文引用的文献

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Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein.极端耐受力水熊虫基因组和水熊虫特有的蛋白质提高了人类培养细胞的耐辐射能力。
Nat Commun. 2016 Sep 20;7:12808. doi: 10.1038/ncomms12808.
3
X-ray Bragg magnifier microscope as a linear shift invariant imaging system: image formation and phase retrieval.
Opt Express. 2014 Sep 8;22(18):21508-20. doi: 10.1364/OE.22.021508.
4
Towards decrypting cryptobiosis--analyzing anhydrobiosis in the tardigrade Milnesium tardigradum using transcriptome sequencing.朝向破译隐生现象——使用转录组测序分析缓步动物水熊虫的脱水休眠。
PLoS One. 2014 Mar 20;9(3):e92663. doi: 10.1371/journal.pone.0092663. eCollection 2014.
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High-resolution high-efficiency X-ray imaging system based on the in-line Bragg magnifier and the Medipix detector.基于线栅式布拉格放大镜和 Medipix 探测器的高分辨率高效率 X 射线成像系统。
J Synchrotron Radiat. 2013 Jan;20(Pt 1):153-9. doi: 10.1107/S0909049512044366. Epub 2012 Nov 10.
6
Criticality in single-distance phase retrieval.单距离相位恢复中的临界性
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Opt Express. 2011 May 23;19(11):10359-76. doi: 10.1364/OE.19.010359.
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Anhydrobiosis in tardigrades--the last decade.水熊虫的抗干燥能力——过去十年的研究进展。
J Insect Physiol. 2011 May;57(5):577-83. doi: 10.1016/j.jinsphys.2011.03.019. Epub 2011 Apr 1.
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The tardigrade Hypsibius dujardini, a new model for studying the evolution of development.缓步动物杜氏高生熊虫,一种用于研究发育进化的新模型。
Dev Biol. 2007 Dec 15;312(2):545-59. doi: 10.1016/j.ydbio.2007.09.055. Epub 2007 Oct 6.