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两种酵母的比较基因组筛选揭示了对苯酚胁迫响应网络中的保守途径。

Comparative Genomic Screen in Two Yeasts Reveals Conserved Pathways in the Response Network to Phenol Stress.

作者信息

Alhoch Bashar, Chen Alan, Chan Elaine, Elkabti Asmaa, Fariña Sasha, Gilbert Catherine, Kang Jean, King Bradley, Leung Karen, Levy Julia, Martin Elizabeth, Mazer Benjamin, McKinney Sara, Moyzis Alexandra, Nurimba Margaret, Ozaki Michelle, Purvis-Roberts Kathleen, Rothman Joshua Marc, Raju Shravya, Selassie Cynthia, Smith Oliver, Ticus Julia, Edwalds-Gilbert Gretchen, Negritto M Cristina, Wang Ruye, Tang Zhaohua

机构信息

W.M. Keck Science Department, The Claremont Colleges, Claremont, CA 91711.

Molecular Biology Program, Pomona College, Claremont, CA 91711.

出版信息

G3 (Bethesda). 2019 Mar 7;9(3):639-650. doi: 10.1534/g3.118.201000.

Abstract

Living organisms encounter various perturbations, and response mechanisms to such perturbations are vital for species survival. Defective stress responses are implicated in many human diseases including cancer and neurodegenerative disorders. Phenol derivatives, naturally occurring and synthetic, display beneficial as well as detrimental effects. The phenol derivatives in this study, butylated hydroxyanisole (BHA), butylated hydroxytoluene (BHT), and bisphenol A (BPA), are widely used as food preservatives and industrial chemicals. Conflicting results have been reported regarding their biological activity and correlation with disease development; understanding the molecular basis of phenol action is a key step for addressing issues relevant to human health. This work presents the first comparative genomic analysis of the genetic networks for phenol stress response in an evolutionary context of two divergent yeasts, and Genomic screening of deletion strain libraries of the two yeasts identified genes required for cellular response to phenol stress, which are enriched in human orthologs. Functional analysis of these genes uncovered the major signaling pathways involved. The results provide a global view of the biological events constituting the defense process, including cell cycle arrest, DNA repair, phenol detoxification by V-ATPases, reactive oxygen species alleviation, and endoplasmic reticulum stress relief through ergosterol and the unfolded protein response, revealing novel roles for these cellular pathways.

摘要

生物体面临各种干扰,而针对此类干扰的反应机制对于物种生存至关重要。有缺陷的应激反应与包括癌症和神经退行性疾病在内的许多人类疾病有关。天然存在的和合成的酚类衍生物具有有益和有害的影响。本研究中的酚类衍生物,丁基羟基茴香醚(BHA)、丁基羟基甲苯(BHT)和双酚A(BPA),被广泛用作食品防腐剂和工业化学品。关于它们的生物活性以及与疾病发展的相关性,已有相互矛盾的报道;了解酚类作用的分子基础是解决与人类健康相关问题的关键一步。这项工作首次在两种不同酵母的进化背景下,对酚类应激反应的遗传网络进行了比较基因组分析。对这两种酵母的缺失菌株文库进行基因组筛选,确定了细胞对酚类应激反应所需的基因,这些基因在人类直系同源基因中富集。对这些基因的功能分析揭示了所涉及的主要信号通路。结果提供了构成防御过程的生物事件的全局视图,包括细胞周期停滞、DNA修复、V-ATP酶对酚类的解毒、活性氧的缓解以及通过麦角固醇和未折叠蛋白反应缓解内质网应激,揭示了这些细胞通路的新作用。

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