Institute of Bioinformatics and Biotechnology, Savitribai Phule Pune University, India.
Indian Institute of Science Education and Research, Pune, India.
FEBS J. 2019 May;286(9):1700-1716. doi: 10.1111/febs.14760. Epub 2019 Feb 15.
Energy metabolism in the diamondback moth Plutella xylostella is facilitated by trehalase, an enzyme which assists in trehalose hydrolysis, from the predominant gut bacterium Enterobacter cloacae. We report the biochemical and structural characterization of recombinant trehalase from E. cloacae (Px_EclTre). Px_EclTre showed K of 1.47 (±0.05) mm, k of 6254.72 min and V 0.2 (±0.002) mm·min at 55 °C and acidic pH. Crystal structures of Px_EclTre were determined in the ligand-free form and bound to the inhibitor Validoxylamine A. The crystal structure of the ligand-free form, unavailable until now for any other bacterial trehalases, enabled us to delineate the conformational changes accompanying ligand binding in trehalases. Multiple salt bridges were identified that potentially facilitated closure of a hood over the substrate-binding site. A cluster of five tryptophans lined the -1 substrate-binding subsite, interacted with crucial active site residues and contributed to both trehalase activity and stability. The importance of these residues in enzyme activity was further validated by mutagenesis studies. Many of these identified residues form part of signature motifs and other conserved sequences in trehalases. The structure analysis thus led to the assignment of the functional role to these conserved residues. This information can be further explored for the design of effective inhibitors against trehalases.
小菜蛾的能量代谢是由海藻糖酶(trehalase)协助海藻糖水解来实现的,而这种酶来源于主要的肠道细菌阴沟肠杆菌(Enterobacter cloacae)。我们报告了阴沟肠杆菌重组海藻糖酶(Px_EclTre)的生化和结构特征。Px_EclTre 在 55°C 和酸性 pH 条件下的 K 值为 1.47(±0.05)mm,k 值为 6254.72 min,V 值为 0.2(±0.002)mm·min。我们还解析了 Px_EclTre 在无配体和与抑制剂 Validoxylamine A 结合两种状态下的晶体结构。此前,尚无任何其他细菌海藻糖酶的无配体晶体结构可用,我们现在可以描述配体结合引起的海藻糖酶构象变化。鉴定出多个盐桥,这些盐桥可能有助于在底物结合位点上方形成一个盖子的闭合。一组五个色氨酸排列在-1 底物结合亚位点上,与关键的活性位点残基相互作用,并对海藻糖酶的活性和稳定性都有贡献。通过突变研究进一步验证了这些残基在酶活性中的重要性。这些鉴定出的残基中的许多残基是海藻糖酶中特征基序和其他保守序列的一部分。结构分析因此确定了这些保守残基的功能作用。这些信息可以进一步探索用于设计有效的海藻糖酶抑制剂。