Slovenian NMR Center , National Institute of Chemistry , Hajdrihova 19 , SI-1000 Ljubljana , Slovenia.
EN-FIST Center of Excellence , Trg OF 13 , SI-1000 Ljubljana , Slovenia.
J Am Chem Soc. 2019 Feb 13;141(6):2594-2603. doi: 10.1021/jacs.8b12748. Epub 2019 Feb 4.
Telomere attrition is closely associated with cell aging and exposure to reactive oxygen species (ROS). While oxidation products of nucleotides have been studied extensively in the past, the underlying secondary/tertiary structural changes in DNA remain poorly understood. In this work, we systematically probed guanine positions in the human telomeric oligonucleotide sequence (hTel) by substitutions with the major product of ROS, 8-oxo-7,8-dihydroguanine (G), and evaluated the G-quadruplex forming ability of such oligonucleotides. Due to reduced hydrogen-bonding capability caused by G, a loss of G-quadruplex structure was observed for most oligonucleotides containing oxidative lesions. However, some positions in the hTel sequence were found to tolerate substitutions with G. Due to G's preference for the syn conformation, distinct responses were observed when replacing guanines with different glycosidic conformations. Accommodation of G at sites originally in syn or anti in nonsubstituted hTel G-quadruplex requires a minor structural rearrangement or a major conformational shift, respectively. The system responds by retaining or switching to a fold where G is in syn conformation. Most importantly, these G-quadruplex structures are still stable at physiological temperatures and should be considered detrimental in higher-order telomere structures.
端粒损耗与细胞衰老和活性氧(ROS)暴露密切相关。虽然核苷酸的氧化产物在过去已经被广泛研究,但 DNA 中的二级/三级结构变化仍知之甚少。在这项工作中,我们通过用 ROS 的主要产物 8-氧代-7,8-二氢鸟嘌呤(G)取代人端粒寡核苷酸序列(hTel)中的鸟嘌呤位置,系统地探测了 hTel 中的鸟嘌呤位置,并评估了这些寡核苷酸形成 G-四链体的能力。由于 G 降低了氢键的形成能力,大多数含有氧化损伤的寡核苷酸失去了 G-四链体结构。然而,在 hTel 序列中的一些位置被发现可以耐受 G 的取代。由于 G 偏爱顺式构象,当用不同糖苷构象取代鸟嘌呤时,会观察到明显不同的反应。在非取代的 hTel G-四链体中,G 在原来处于顺式或反式的位置的取代需要较小的结构重排或较大的构象转变。该系统通过保留或切换到 G 处于顺式构象的折叠来做出响应。最重要的是,这些 G-四链体结构在生理温度下仍然稳定,并且应该被认为在更高阶的端粒结构中是有害的。