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在分子动力学模拟中识别不同分子数的碰撞

Identifying Collisions of Various Molecularities in Molecular Dynamics Simulations.

作者信息

Rafatijo Homayoon, Monge-Palacios M, Thompson Donald L

机构信息

Department of Chemistry , University of Missouri-Columbia , Columbia , Missouri 65211-7600 , United States.

出版信息

J Phys Chem A. 2019 Feb 14;123(6):1131-1139. doi: 10.1021/acs.jpca.8b11686. Epub 2019 Feb 5.

Abstract

We present a method based on kinetic molecular theory that identifies reactions of various molecularities in molecular dynamics (MD) simulations of bulk gases. The method allows characterization of the thermodynamic conditions at which higher than bimolecular reactions are a factor in the mechanisms of complex gas-phase chemistry. Starting with Bodenstein's definition of termolecular collisions we derive analytical expressions for the frequency of higher molecularity collisions. We have developed a relationship for the ratio of the frequencies of termolecular to bimolecular collisions in terms of the temperature, density, and collision times. To demonstrate the method, we used ReaxFF in LAMMPS to carry out MD simulations for NVT ensembles of mixtures of H-O over the density range 120.2-332.7 kg m and temperature range 3000-5000 K. The simulations yield ReaxFF-based predictions of the relative importance of termolecular collisions O···H···O and bimolecular collisions O···H in the early chemistry of hydrogen combustion.

摘要

我们提出了一种基于动力学分子理论的方法,该方法可在体气体的分子动力学(MD)模拟中识别各种分子数的反应。该方法能够表征热力学条件,在这些条件下,高于双分子的反应是复杂气相化学反应机理中的一个因素。从博登施泰因对三分子碰撞的定义出发,我们推导出了更高分子数碰撞频率的解析表达式。我们建立了一个关于三分子与双分子碰撞频率之比与温度、密度和碰撞时间的关系。为了演示该方法,我们在LAMMPS中使用ReaxFF对H - O混合物的NVT系综在120.2 - 332.7 kg/m³的密度范围和3000 - 5000 K的温度范围内进行了MD模拟。这些模拟得出了基于ReaxFF的关于三分子碰撞O···H···O和双分子碰撞O···H在氢燃烧早期化学中相对重要性的预测。

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