Department of Chemistry and Pharmaceutical Sciences, Amsterdam Center for Multiscale Modeling, Vrije Universiteit Amsterdam, 1081 HV, Amsterdam, The Netherlands.
Department of Chemistry, Biology and Biotechnology, University of Perugia, I-06123, Perugia, Italy.
J Comput Chem. 2019 Mar 30;40(8):944-951. doi: 10.1002/jcc.25775.
The effects on the activity of thyroxine (T4) due to the chalcogen replacement in a series of peri-substituted naphthalenes mimicking the catalytic function of deiodinase enzymes are computationally examined using density functional theory. In particular, T4 inner-ring deiodination pathways assisted by naphthyl-based models bearing two tellurols and a tellurol-thiol pair in peri-position are explored and compared with the analogous energy profiles for the naphthalene mimic having two selenols. The presence of a halogen bond (XB) in the intermediate formed in the first step and involved in the rate-determining step of the reaction is assumed to facilitate the process increasing the rate of the reaction. The rate-determining step calculated energy barrier heights allow rationalizing the experimentally observed superior catalytic activity of tellurium containing mimics. Charge displacement analysis is used to ascertain the presence and the role of the electron density charge transfer occurring in the rate-determining step of the reaction, suggesting the incipient formation or presence of a XB interaction. © 2019 Wiley Periodicals, Inc.
使用密度泛函理论计算了一系列拟似脱碘酶催化功能的取代萘中硫属元素取代对甲状腺素(T4)活性的影响。具体而言,研究了含有两个碲酚和一个碲酚-硫醇对的萘基模型对内环脱碘途径的辅助作用,并与具有两个硒酚的萘类似物的类似能量曲线进行了比较。假设在第一步形成的中间体中存在卤键(XB),并参与反应的速率决定步骤,这有利于增加反应速率。计算得到的速率决定步骤的能量势垒高度可以合理地解释含碲模拟物具有优越催化活性的实验观察结果。电荷位移分析用于确定在反应的速率决定步骤中发生的电子密度电荷转移的存在和作用,表明初始形成或存在 XB 相互作用。© 2019 威利父子公司