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药物反应和药物不良反应预测:从双胞胎研究到下一代测序。

Prediction of drug response and adverse drug reactions: From twin studies to Next Generation Sequencing.

机构信息

Department of Physiology and Pharmacology, Section of Pharmacogenetics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

Department of Physiology and Pharmacology, Section of Pharmacogenetics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.

出版信息

Eur J Pharm Sci. 2019 Mar 15;130:65-77. doi: 10.1016/j.ejps.2019.01.024. Epub 2019 Jan 23.

Abstract

Understanding and predicting inter-individual differences related to the success of drug therapy is of tremendous importance, both during drug development and for clinical applications. Importantly, while seminal twin studies indicate that the majority of inter-individual differences in drug disposition are driven by hereditary factors, common genetic polymorphisms explain only less than half of this genetically encoded variability. Recent progress in Next Generation Sequencing (NGS) technologies has for the first time allowed to comprehensively map the genetic landscape of human pharmacogenes. Importantly, these projects have unveiled vast numbers of rare genetic variants, which are estimated to contribute substantially to the missing heritability of drug metabolism phenotypes. However, functional interpretation of these rare variants remains challenging and constitutes one of the important frontiers of contemporary pharmacogenomics. Furthermore, NGS technologies face challenges in the interrogation of genes residing in complex genomic regions, such as CYP2D6 and HLA genes. We here provide an update of the implementation of pharmacogenomic variations in the clinical setting and present emerging strategies that facilitate the translation of NGS data into clinically useful information. Importantly, we anticipate that these developments will soon result in a paradigm shift of pre-emptive genotyping away from the interrogation to candidate variants and towards the comprehensive profiling of an individuals genotype, thus allowing for a true individualization of patient drug treatment regimens.

摘要

理解和预测与药物治疗成功相关的个体间差异非常重要,无论是在药物开发过程中还是在临床应用中。重要的是,虽然开创性的双胞胎研究表明,药物处置的大多数个体间差异是由遗传因素驱动的,但常见的遗传多态性仅能解释这种遗传编码变异性的不到一半。新一代测序 (NGS) 技术的最新进展首次使人们能够全面绘制人类药物基因的遗传图谱。重要的是,这些项目揭示了大量罕见的遗传变异,据估计,这些变异对药物代谢表型的遗传缺失有很大贡献。然而,这些罕见变异的功能解释仍然具有挑战性,是当代药物基因组学的重要前沿之一。此外,NGS 技术在检测 CYP2D6 和 HLA 等复杂基因组区域的基因时面临挑战。我们在这里提供了临床实践中实施药物基因组学变异的最新情况,并介绍了新兴策略,这些策略有助于将 NGS 数据转化为临床有用的信息。重要的是,我们预计这些发展将很快导致预先进行基因分型的范式转变,从对候选变异的检测转向对个体基因型的全面分析,从而真正实现患者药物治疗方案的个体化。

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