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新种蒙氏戴氏菌和嗜冷戴氏菌,从中国鼎湖山季风常绿阔叶林土壤中分离得到。

Dyella monticola sp. nov. and Dyella psychrodurans sp. nov., isolated from monsoon evergreen broad-leaved forest soil of Dinghu Mountain, China.

作者信息

Zhou Xiang-Yue, Gao Zeng-Hong, Chen Mei-Hong, Jian Mei-Qi, Qiu Li-Hong

机构信息

State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, PR China.

出版信息

Int J Syst Evol Microbiol. 2019 Apr;69(4):1016-1023. doi: 10.1099/ijsem.0.003259. Epub 2019 Jan 31.

Abstract

Cells of bacterial strains 4 G-K06 and 4MSK11, isolated from soil samples collected from monsoon evergreen broad-leaved forest of the Dinghushan Mountain (112° 31' E 23° 10' N), Guangdong Province, PR China, were Gram-stain-negative, aerobic, non-spore-forming, non-motile and rod-shaped. Strain 4 G-K06 grew at 10-37 °C, pH 3.5-7.5 and 0-3.5 % (w/v) NaCl; while 4MSK11 grew at 4-42 °C, pH 3.5-7.5 and 0-2.5 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed strain 4 G-K06 formed a clade with Dyellaflagellata 4 M-K16, Dyella acidisoli 4M-Z03, Dyellahumi DHG40 and Dyellanitratireducens DHG59, while strain 4MSK11 formed a clade with Dyellacaseinilytica DHOB09 and Dyellamobilis DHON07, both within the genus Dyella. The result of the partial atpD, gyrB and lepA gene sequence analysis supported the conclusion based on 16S rRNA gene sequence analysis, which showed that these two strains represent two novel species of Dyella. The average nucleotide identity and digital DNA-DNA hybridization value for the whole genomes were 75.0-79.0 and 20.3-22.6 % between strains 4 G-K06, 4MSK11 and those described Dyella species with genome sequences; while the DNA-DNA hybridization rates between strains 4 G-K06, 4MSK11 and closely related Dyella species (without genome sequence) were 29.5-41.8 %. The major cellular fatty acids of these two strains were iso-C15 : 0, iso-C16 : 0 and iso-C17 : 1ω9c, while the major polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and several unidentified phospholipids and aminophospholipids. The only ubiquinone of these two strains was ubiquinone-8. The DNA G+C contents of 4 G-K06 and 4MSK11 were 60.4 and 61.3 mol%, respectively. On the basis of the evidence presented here, strains 4 G-K06 and 4MSK11 represent two novel species of the genus Dyella, for which the names Dyella monticola sp. nov. (type strain 4 G-K06=LMG 30268=GDMCC 1.1188) and Dyella psychrodurans sp. nov. (type strain 4MSK11=KCTC 62280=GDMCC 1.1185) are proposed.

摘要

从中国广东省鼎湖山(东经112°31′,北纬23°10′)季风常绿阔叶林采集的土壤样本中分离出的细菌菌株4 G-K06和4MSK11的细胞,革兰氏染色呈阴性,需氧,不形成芽孢,无运动性,呈杆状。菌株4 G-K06在10 - 37°C、pH 3.5 - 7.5和0 - 3.5%(w/v)NaCl条件下生长;而4MSK11在4 - 42°C、pH 3.5 - 7.5和0 - 2.5%(w/v)NaCl条件下生长。基于16S rRNA基因序列的系统发育分析表明,菌株4 G-K06与鞭毛迪茨氏菌4 M-K16、嗜酸迪茨氏菌4M-Z03、土壤迪茨氏菌DHG40和硝酸盐还原迪茨氏菌DHG59形成一个分支,而菌株4MSK11与解酪迪茨氏菌DHOB09和运动迪茨氏菌DHON07形成一个分支,二者均在迪茨氏菌属内。部分atpD、gyrB和lepA基因序列分析结果支持基于16S rRNA基因序列分析得出的结论,即这两个菌株代表迪茨氏菌属的两个新物种。4 G-K06、4MSK11与已公布基因组序列的迪茨氏菌属物种之间的全基因组平均核苷酸同一性和数字DNA-DNA杂交值分别为75.0 - 79.0%和20.3 - 22.6%;而4 G-K06、4MSK11与密切相关的迪茨氏菌属物种(无基因组序列)之间的DNA-DNA杂交率为29.5 - 41.8%。这两个菌株的主要细胞脂肪酸为异-C15 : 0、异-C16 : 0和异-C17 : 1ω9c,而主要极性脂类由磷脂酰乙醇胺、磷脂酰甘油、二磷脂酰甘油和几种未鉴定的磷脂及氨基磷脂组成。这两个菌株唯一的泛醌是泛醌-8。4 G-K06和4MSK11的DNA G+C含量分别为60.4和61.3 mol%。基于此处提供的证据,菌株4 G-K06和4MSK分别代表迪茨氏菌属的两个新物种,为此提出新名称:蒙氏迪茨氏菌(Dyella monticola sp. nov.)(模式菌株4 G-K06 = LMG 30268 = GDMCC 1.1188)和耐冷迪茨氏菌(Dyella psychrodurans sp. nov.)(模式菌株4MSK11 = KCTC 62280 = GDMCC 1.1185)。

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