从智利中部金特罗湾原油污染沉积物中分离出的海洋烃降解菌水生产碱菌QD168的全基因组序列
Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile.
作者信息
Durán Roberto E, Barra-Sanhueza Bárbara, Salvà-Serra Francisco, Méndez Valentina, Jaén-Luchoro Daniel, Moore Edward R B, Seeger Michael
机构信息
Molecular Microbiology and Environmental Biotechnology Laboratory, Department of Chemistry & Centro de Biotecnología Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, Valparaíso, Chile.
Department of Infectious Diseases, Institute for Biomedicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
出版信息
Microbiol Resour Announc. 2019 Jan 31;8(5). doi: 10.1128/MRA.01664-18. eCollection 2019 Jan.
Abstract
Alcaligenes aquatilis strain QD168 (= CCUG 69566) is a marine hydrocarbon-degrading bacterium isolated from crude oil-polluted sediment from Quintero Bay, Central Chile. Here, we present the 4.32-Mb complete genome sequence of strain QD168, with 3,892 coding sequences, 58 tRNAs, and a 56.3% G+C content.
摘要
水生产碱菌菌株QD168（= CCUG 69566）是一种从智利中部金特罗湾受原油污染的沉积物中分离出的海洋烃降解细菌。在此，我们展示了菌株QD168的432万个碱基对的完整基因组序列，其中有3892个编码序列、58个转运RNA，以及56.3%的鸟嘌呤与胞嘧啶含量。
相似文献
1
Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile.从智利中部金特罗湾原油污染沉积物中分离出的海洋烃降解菌水生产碱菌QD168的全基因组序列
Microbiol Resour Announc. 2019 Jan 31;8(5). doi: 10.1128/MRA.01664-18. eCollection 2019 Jan.
2
Genomic and Physiological Traits of the Marine Bacterium QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors.从智利中部金特罗湾分离出的海洋细菌QD168的基因组和生理特征揭示了其对环境压力源的强大适应性反应。
Front Microbiol. 2019 Apr 5;10:528. doi: 10.3389/fmicb.2019.00528. eCollection 2019.
3
Complete Genome Sequence of Hydrocarbon-Degrading Halotolerant Acinetobacter radioresistens DD78, Isolated from the Aconcagua River Mouth in Central Chile.从智利中部阿空加瓜河口分离出的耐盐耐辐射不动杆菌DD78的全基因组序列，该菌株可降解碳氢化合物
Microbiol Resour Announc. 2019 Aug 15;8(33):e00601-19. doi: 10.1128/MRA.00601-19.
4
Complete Genome Sequence of the Hydrocarbon-Degrading Strain Achromobacter sp. B7, Isolated during Petroleum Hydrocarbon Bioremediation in the Valparaiso Region, Chile.从智利瓦尔帕莱索地区石油烃生物修复过程中分离出的烃降解菌株无色杆菌属B7的全基因组序列
Microbiol Resour Announc. 2018 Nov 15;7(19). doi: 10.1128/MRA.01326-18. eCollection 2018 Nov.
5
Draft Genome Sequence of sp. Strain AL4B, a Marine Bacterium Isolated from Quintero Bay, Chile.从智利金特罗湾分离出的海洋细菌sp.菌株AL4B的基因组序列草图
Microbiol Resour Announc. 2021 Oct 21;10(42):e0085621. doi: 10.1128/MRA.00856-21.
6
The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.水生不动杆菌 BU33N 基因组：烃类降解能力的研究。
PLoS One. 2019 Sep 24;14(9):e0221574. doi: 10.1371/journal.pone.0221574. eCollection 2019.
7
Complete genome sequence of Sphingorhabdus sp. M41, a versatile hydrocarbon degrader, isolated from crude oil-contaminated costal sediment.从原油污染的海岸沉积物中分离出的多功能烃降解菌——鞘脂菌属M41的全基因组序列
J Biotechnol. 2016 Jun 10;227:41-42. doi: 10.1016/j.jbiotec.2016.04.016. Epub 2016 Apr 11.
8
16S rRNA Amplicon Sequencing of Seawater Microbiota from Quintero Bay, Chile, Affected by Oil Spills, Shows the Presence of an Oil-Degrading Marine Bacterial Guild Structured by the Bacterial Genera , and .对受漏油事件影响的智利金特罗湾海水微生物群进行的16S rRNA扩增子测序显示，存在一个由细菌属和构建的降解石油的海洋细菌群落。
Microbiol Resour Announc. 2018 Nov 29;7(21). doi: 10.1128/MRA.01366-18. eCollection 2018 Nov.
9
Genome Sequence of the Petroleum Hydrocarbon-Degrading Bacterium Alcanivorax sp. Strain 97CO-5.石油烃降解细菌食烷菌属菌株97CO-5的基因组序列
Genome Announc. 2014 Dec 11;2(6):e01277-14. doi: 10.1128/genomeA.01277-14.
10
Draft Genome Sequence of BDB4, a Polyaromatic Hydrocarbon-Degrading Bacterium Isolated from Crude Oil-Contaminated Soil.BDB4的基因组草图序列，一种从原油污染土壤中分离出的多环芳烃降解细菌。
Genome Announc. 2017 Nov 30;5(48):e01346-17. doi: 10.1128/genomeA.01346-17.
引用本文的文献
1
Synthesis and Degradation of the Phytohormone Indole-3-Acetic Acid by the Versatile Bacterium LB400 and Its Growth Promotion of Plant.多功能细菌LB400对植物激素吲哚 - 3 - 乙酸的合成与降解及其对植物的促生长作用
Plants (Basel). 2024 Dec 18;13(24):3533. doi: 10.3390/plants13243533.
2
Whole-genome sequencing of sp. strain MMA: insight into the antibiotic and heavy metal resistant genes.sp. 菌株MMA的全基因组测序：对抗生素和重金属抗性基因的洞察
Front Pharmacol. 2023 May 11;14:1144561. doi: 10.3389/fphar.2023.1144561. eCollection 2023.
3
GTE53: Phosphate solubilising and bioremediation bacterium isolated from new biotope "phosphate sludge enriched-compost".GTE53：从新的生物群落“富含磷酸盐污泥的堆肥”中分离出的解磷及生物修复细菌。
Saudi J Biol Sci. 2021 Jan;28(1):371-379. doi: 10.1016/j.sjbs.2020.10.015. Epub 2020 Oct 15.
4
Mechanisms of halotolerant plant growth promoting sp. involved in salt tolerance and enhancement of the growth of rice under salinity stress.耐盐促植物生长菌参与水稻在盐胁迫下耐盐性及生长增强的机制。
3 Biotech. 2020 Aug;10(8):361. doi: 10.1007/s13205-020-02348-5. Epub 2020 Jul 30.
5
The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity.水生不动杆菌 BU33N 基因组：烃类降解能力的研究。
PLoS One. 2019 Sep 24;14(9):e0221574. doi: 10.1371/journal.pone.0221574. eCollection 2019.
6
Genomic and Physiological Traits of the Marine Bacterium QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors.从智利中部金特罗湾分离出的海洋细菌QD168的基因组和生理特征揭示了其对环境压力源的强大适应性反应。
Front Microbiol. 2019 Apr 5;10:528. doi: 10.3389/fmicb.2019.00528. eCollection 2019.
本文引用的文献
1
Complete Genome Sequence of the Hydrocarbon-Degrading Strain Achromobacter sp. B7, Isolated during Petroleum Hydrocarbon Bioremediation in the Valparaiso Region, Chile.从智利瓦尔帕莱索地区石油烃生物修复过程中分离出的烃降解菌株无色杆菌属B7的全基因组序列
Microbiol Resour Announc. 2018 Nov 15;7(19). doi: 10.1128/MRA.01326-18. eCollection 2018 Nov.
2
Draft Genome Sequence of BDB4, a Polyaromatic Hydrocarbon-Degrading Bacterium Isolated from Crude Oil-Contaminated Soil.BDB4的基因组草图序列，一种从原油污染土壤中分离出的多环芳烃降解细菌。
Genome Announc. 2017 Nov 30;5(48):e01346-17. doi: 10.1128/genomeA.01346-17.
3
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database.CARD 2017：全面抗生素抗性数据库的扩展及以模型为中心的管理
Nucleic Acids Res. 2017 Jan 4;45(D1):D566-D573. doi: 10.1093/nar/gkw1004. Epub 2016 Oct 26.
4
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS：一个基于成对基因组比较进行原核生物物种界定的网络服务器。
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
6
Biodegradation of organochlorine pesticide endosulfan by bacterial strain Alcaligenes faecalis JBW4.粪产碱杆菌 JBW4 对有机氯农药硫丹的生物降解
J Environ Sci (China). 2013 Nov 1;25(11):2257-64. doi: 10.1016/s1001-0742(12)60288-5.
7
Draft genome sequence of atrazine-utilizing bacteria isolated from Indian agricultural soil.从印度农业土壤中分离出的利用阿特拉津的细菌的基因组序列草图
Genome Announc. 2014 Jan 9;2(1):e01149-13. doi: 10.1128/genomeA.01149-13.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Clustal W and Clustal X version 2.0.Clustal W和Clustal X 2.0版本
Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10.
10
Biodegradation of phenol at high initial concentration by Alcaligenes faecalis.粪产碱菌对高初始浓度苯酚的生物降解作用
J Hazard Mater. 2007 Aug 17;147(1-2):672-6. doi: 10.1016/j.jhazmat.2007.05.031. Epub 2007 May 16.
Zotero 插件