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TSA-CRAFT:一款用于自动和稳健热位移分析数据的免费软件。

TSA-CRAFT: A Free Software for Automatic and Robust Thermal Shift Assay Data Analysis.

机构信息

1 Cancer Science Institute of Singapore, National University of Singapore, Singapore.

2 Laboratory of Cancer Epigenome, Division of Medical Sciences, National Cancer Centre Singapore, Singapore.

出版信息

SLAS Discov. 2019 Jun;24(5):606-612. doi: 10.1177/2472555218823547. Epub 2019 Feb 11.

Abstract

Thermal shift assay (TSA) is an increasingly popular technique used for identifying protein stabilizing conditions or interacting ligands in X-ray crystallography and drug discovery applications. Although the setting up and running of TSA reactions is a relatively simple process, the subsequent analysis of TSA data, especially in high-throughput format, requires substantial amount of effort if conducted manually. We therefore developed the Thermal Shift Assay-Curve Rapid and Automatic Fitting Tool (TSA-CRAFT), a freely available software that enable automatic analysis of TSA data of any throughput. TSA-CRAFT directly reads real-time PCR instrument data files and displays the analyzed results in a web browser. This software features streamlined data processing and Boltzmann equation fitting, which is demonstrated in this study to provide more accurate data analysis than the commonly used first-derivative method. TSA-CRAFT is freely available as a cross-operating system-compatible standalone tool ( https://sourceforge.net/projects/tsa-craft/ ) and also as a freely accessible web server ( http://tbtlab.org/tsacraft.html ).

摘要

热转移分析(TSA)是一种在 X 射线晶体学和药物发现应用中越来越受欢迎的技术,用于鉴定蛋白质稳定条件或相互作用的配体。尽管 TSA 反应的设置和运行是一个相对简单的过程,但如果手动进行,随后对 TSA 数据的分析,特别是在高通量格式下,需要大量的工作。因此,我们开发了热转移分析-曲线快速自动拟合工具(TSA-CRAFT),这是一个免费提供的软件,可实现任何通量的 TSA 数据的自动分析。TSA-CRAFT 直接读取实时 PCR 仪器数据文件,并在网络浏览器中显示分析结果。该软件具有简化的数据处理和玻尔兹曼方程拟合功能,在这项研究中证明比常用的一阶导数法提供更准确的数据分析。TSA-CRAFT 作为一个跨操作系统兼容的独立工具(https://sourceforge.net/projects/tsa-craft/)免费提供,也作为一个免费访问的网络服务器(http://tbtlab.org/tsacraft.html)提供。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8d57/6537141/de929e001f2e/10.1177_2472555218823547-fig1.jpg

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