Van Holle Sofie, Van Damme Els J M
Laboratory of Biochemistry and Glycobiology, Department of Biotechnology, Ghent University, Ghent, Belgium.
Front Plant Sci. 2019 Jan 29;10:36. doi: 10.3389/fpls.2019.00036. eCollection 2019.
Lectins are a large and diverse class of proteins, found in all kingdoms of life. Plants are known to express different types of carbohydrate-binding proteins, each containing at least one particular lectin domain which enables them to specifically recognize and bind carbohydrate structures. The group of plant lectins is heterogeneous in terms of structure, biological activity and function. Lectins control various aspects of plant development and defense. Some lectins facilitate recognition of exogenous danger signals or play a role in endogenous signaling pathways, while others are considered as storage proteins or involved in symbiotic relationships. In this study, we revisit the origin of the different plant lectin families in view of the recently reshaped tree of life. Due to new genomic sampling of previously unknown microbial lineages, the tree of life has expanded and was reshaped multiple times. In addition, more plant genomes especially from basal Phragmoplastophyta, bryophytes, and Salviniales (e.g., , and ) have been analyzed, and annotated genome sequences have become accessible. We searched 38 plant genome sequences including core eudicots, monocots, gymnosperms, fern, lycophytes, bryophytes, charophytes, chlorophytes, glaucophytes, and rhodophytes for lectin motifs, performed an extensive comparative analysis of lectin domain architectures, and determined the phylogenetic and evolutionary history of lectins in the plant lineage. In conclusion, we describe the conservation of particular domains in plant lectin sequences obtained from algae to higher plants. The strong conservation of several lectin motifs highlights their significance for plants.
凝集素是一类庞大且多样的蛋白质,存在于所有生物界。已知植物会表达不同类型的碳水化合物结合蛋白,每种蛋白至少包含一个特定的凝集素结构域,这使它们能够特异性识别并结合碳水化合物结构。植物凝集素在结构、生物活性和功能方面具有异质性。凝集素控制着植物发育和防御的各个方面。一些凝集素促进对外源危险信号的识别或在内源信号通路中发挥作用,而其他一些则被视为储存蛋白或参与共生关系。在本研究中,鉴于最近重塑的生命之树,我们重新审视了不同植物凝集素家族的起源。由于对先前未知微生物谱系进行了新的基因组采样,生命之树得到了扩展并多次重塑。此外,已经分析了更多植物基因组,特别是来自基部有隔藻纲、苔藓植物和槐叶苹目(例如, 、 和 )的基因组,并且可获取注释的基因组序列。我们在38个植物基因组序列中搜索凝集素基序,这些序列包括核心真双子叶植物、单子叶植物、裸子植物、蕨类植物、石松类植物、苔藓植物、轮藻、绿藻、灰胞藻和红藻,对凝集素结构域架构进行了广泛的比较分析,并确定了植物谱系中凝集素的系统发育和进化历史。总之,我们描述了从藻类到高等植物的植物凝集素序列中特定结构域的保守性。几种凝集素基序的高度保守突出了它们对植物的重要性。