Department of Chemistry, University of California, Irvine, Irvine, CA 92697, United States of America.
Department of Physiology and Biophysics, University of California, Irvine, Irvine, CA 92697, United States of America.
Biochim Biophys Acta Biomembr. 2019 May 1;1861(5):988-996. doi: 10.1016/j.bbamem.2019.02.007. Epub 2019 Feb 22.
Aquaporin 0 (AQP0) is essential for eye lens homeostasis as is regulation of its water permeability by Ca, which occurs through interactions with calmodulin (CaM), but the underlying molecular mechanisms are not well understood. Here, we use molecular dynamics (MD) simulations on the microsecond timescale under an osmotic gradient to explicitly model water permeation through the AQP0 channel. To identify any structural features that are specific to water permeation through AQP0, we also performed simulations of aquaporin 1 (AQP1) and a pure mixed lipid bilayer under the same conditions. The relative single-channel water osmotic permeability coefficients (p) calculated from all of our simulations are in reasonable agreement with experiment. Our simulations allowed us to characterize the dynamics of the key structural elements that modulate the diffusion of water single-files through the AQP0 and AQP1 pores. We find that CaM binding influences the collective dynamics of the whole AQP0 tetramer, promoting the closing of both the extracellular and intracellular gates by inducing cooperativity between neighboring subunits.
水通道蛋白 0(AQP0)对于眼晶状体的内稳态至关重要,其水通透性可通过与钙调蛋白(CaM)的相互作用来调节,但是其潜在的分子机制尚不清楚。在这里,我们使用渗透压梯度下的微秒时间尺度的分子动力学(MD)模拟,明确模拟水通过 AQP0 通道的渗透。为了确定通过 AQP0 水渗透所特有的任何结构特征,我们还在相同条件下对水通道蛋白 1(AQP1)和纯混合脂质双层进行了模拟。我们所有模拟计算得出的相对单通道水渗透压渗透率系数(p)与实验结果相符。我们的模拟使我们能够描述调节水单分子通过 AQP0 和 AQP1 孔扩散的关键结构元素的动力学。我们发现 CaM 结合会影响整个 AQP0 四聚体的集体动力学,通过诱导相邻亚基之间的协同作用,促进细胞外和细胞内门的关闭。