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甲状旁腺腺瘤与正常甲状旁腺组织中的比较基因表达谱

Comparative Gene Expression Profiles in Parathyroid Adenoma and Normal Parathyroid Tissue.

作者信息

Chai Young Jun, Chae Heejoon, Kim Kwangsoo, Lee Heonyi, Choi Seongmin, Lee Kyu Eun, Kim Sang Wan

机构信息

Department of Surgery, Seoul Metropolitan Government-Seoul National University Boramae Medical Center, Seoul 07061, Korea.

Division of Computer Science, Sookmyung Women's University, Seoul 04310, Korea.

出版信息

J Clin Med. 2019 Mar 2;8(3):297. doi: 10.3390/jcm8030297.

Abstract

Parathyroid adenoma is the main cause of primary hyperparathyroidism, which is characterized by enlarged parathyroid glands and excessive parathyroid hormone secretion. Here, we performed transcriptome analysis, comparing parathyroid adenomas with normal parathyroid gland tissue. RNA extracted from ten parathyroid adenoma and five normal parathyroid samples was sequenced, and differentially expressed genes (DEGs) were identified using strict cut-off criteria. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using DEGs as the input, and protein-protein interaction (PPI) networks were constructed using Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) and visualized in Cytoscape. Among DEGs identified in parathyroid adenomas ( = 247; 45 up-regulated, 202 down-regulated), the top five GO terms for up-regulated genes were nucleoplasm, nucleus, transcription DNA-template, regulation of mRNA processing, and nucleic acid binding, while those for down-regulated genes were extracellular exosome, membrane endoplasmic reticulum (ER), membrane, ER, and melanosome. KEGG enrichment analysis revealed significant enrichment of five pathways: protein processing in ER, protein export, RNA transport, glycosylphosphatidylinositol-anchor biosynthesis, and pyrimidine metabolism. Further, PPI network analysis identified a densely connected sub-module, comprising eight hub molecules: , , , , , , , and . These findings may be helpful in further analysis of the mechanisms underlying parathyroid adenoma development.

摘要

甲状旁腺腺瘤是原发性甲状旁腺功能亢进的主要原因,其特征是甲状旁腺肿大和甲状旁腺激素分泌过多。在此,我们进行了转录组分析,将甲状旁腺腺瘤与正常甲状旁腺组织进行比较。从10个甲状旁腺腺瘤和5个正常甲状旁腺样本中提取的RNA进行了测序,并使用严格的截止标准鉴定了差异表达基因(DEGs)。以DEGs作为输入进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,并使用搜索相互作用基因/蛋白质的工具(STRING)构建蛋白质-蛋白质相互作用(PPI)网络,并在Cytoscape中进行可视化。在甲状旁腺腺瘤中鉴定出的DEGs(n = 247;45个上调,202个下调)中,上调基因的前五个GO术语是核质、细胞核、转录DNA模板、mRNA加工调控和核酸结合,而下调基因的前五个GO术语是细胞外囊泡、内质网(ER)膜、膜、ER和黑素体。KEGG富集分析揭示了五个通路的显著富集:内质网中的蛋白质加工、蛋白质输出、RNA转运、糖基磷脂酰肌醇锚定生物合成和嘧啶代谢。此外,PPI网络分析确定了一个紧密连接的子模块,包含八个枢纽分子:……(此处原文缺失枢纽分子具体名称)。这些发现可能有助于进一步分析甲状旁腺腺瘤发生的潜在机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c1c/6463127/8a159b072e52/jcm-08-00297-g001.jpg

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