菌株IVM-t1的基因组序列草图
Draft Genome Sequence of Strain IVM-t1.
作者信息
Davaasuren Batdorj, Yamagishi Junya, Mizushima Daiki, Narantsatsral Sandagdorj, Otgonsuren Davaajav, Myagmarsuren Punsantsogvoo, Battsetseg Badgar, Battur Banzragch, Inoue Noboru, Suganuma Keisuke
机构信息
National Research Center for Protozoan Diseases, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido, Japan.
Laboratory of Molecular Genetics, Institute of Veterinary Medicine, Mongolian University of Life Sciences, Ulaanbaatar, Mongolia.
出版信息
Microbiol Resour Announc. 2019 Feb 28;8(9). doi: 10.1128/MRA.01119-18. eCollection 2019 Feb.
Abstract
Trypanosoma equiperdum primarily parasitizes the genital organs and causes dourine in equidae. We isolated a new T. equiperdum strain, T. equiperdum IVM-t1, from the urogenital tract of a horse definitively diagnosed as having dourine in Mongolia. Here, we report the whole-genome sequence, the predicted gene models, and their annotations.
摘要
马媾疫锥虫主要寄生于生殖器官，可引起马科动物的马媾疫。我们从蒙古一匹确诊患有马媾疫的马的泌尿生殖道中分离出一种新的马媾疫锥虫菌株，即马媾疫锥虫IVM-t1。在此，我们报告其全基因组序列、预测的基因模型及其注释。
相似文献
1
Draft Genome Sequence of Strain IVM-t1.
Microbiol Resour Announc. 2019 Feb 28;8(9). doi: 10.1128/MRA.01119-18. eCollection 2019 Feb.
2
Isolation, cultivation and molecular characterization of a new Trypanosoma equiperdum strain in Mongolia.
Parasit Vectors. 2016 Aug 31;9(1):481. doi: 10.1186/s13071-016-1755-3.
3
First Draft Genome Sequence of the Dourine Causative Agent: Strain OVI.
J Genomics. 2017 Jan 12;5:1-3. doi: 10.7150/jgen.17904. eCollection 2017.
4
Pathology of female mice experimentally infected with an in vitro cultured strain of Trypanosoma equiperdum.
J Vet Med Sci. 2021 Aug 6;83(8):1212-1218. doi: 10.1292/jvms.21-0056. Epub 2021 Jun 16.
5
The establishment of in vitro culture and drug screening systems for a newly isolated strain of Trypanosoma equiperdum.
Int J Parasitol Drugs Drug Resist. 2017 Aug;7(2):200-205. doi: 10.1016/j.ijpddr.2017.04.002. Epub 2017 Apr 13.
6
The current challenges of dourine: difficulties in differentiating Trypanosoma equiperdum within the subgenus Trypanozoon.
Rev Sci Tech. 2003 Dec;22(3):1087-96. doi: 10.20506/rst.22.3.1460.
7
Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes.
Parasit Vectors. 2015 Oct 15;8:536. doi: 10.1186/s13071-015-1129-2.
8
Histopathological lesions in reproductive organs, distal spinal cord and peripheral nerves of horses naturally infected with Trypanosoma equiperdum.
BMC Vet Res. 2019 May 28;15(1):175. doi: 10.1186/s12917-019-1916-7.
9
Validation of a new experimental model for assessing drug efficacy against infection with Trypanosoma equiperdum in horses.
Vet Parasitol. 2018 Nov 15;263:27-33. doi: 10.1016/j.vetpar.2018.10.005. Epub 2018 Oct 9.
10
The evaluation of GM6-based ELISA and ICT as diagnostic methods on a Mongolian farm with an outbreak of non-tsetse transmitted horse trypanosomosis.
Vet Parasitol. 2017 Sep 15;244:123-128. doi: 10.1016/j.vetpar.2017.07.036. Epub 2017 Aug 2.
引用本文的文献
1
Detecting complex infections in trypanosomatids using whole genome sequencing.
BMC Genomics. 2024 Oct 29;25(1):1011. doi: 10.1186/s12864-024-10862-6.
2
Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research.
Front Cell Infect Microbiol. 2022 Jun 6;12:900878. doi: 10.3389/fcimb.2022.900878. eCollection 2022.
3
Bhalin, an Essential Cytoskeleton-Associated Protein of Linking BILBO1 of the Flagellar Pocket Collar with the Hook Complex.
Microorganisms. 2021 Nov 11;9(11):2334. doi: 10.3390/microorganisms9112334.
4
Genomics of Trypanosomatidae: Where We Stand and What Needs to Be Done?
Pathogens. 2021 Sep 2;10(9):1124. doi: 10.3390/pathogens10091124.
5
Monomorphic : towards reconciling phylogeny and pathologies.
Microb Genom. 2021 Aug;7(8). doi: 10.1099/mgen.0.000632.
6
Comparative analysis of draft genome assemblies developed from whole genome sequences of two isolate samples differing in field virulence on .
Biotechnol Rep (Amst). 2021 Jun 22;31:e00653. doi: 10.1016/j.btre.2021.e00653. eCollection 2021 Sep.
7
Nationwide serological surveillance of non-tsetse-transmitted horse trypanosomoses in Mongolia.
Parasite Epidemiol Control. 2020 Jun 25;10:e00158. doi: 10.1016/j.parepi.2020.e00158. eCollection 2020 Aug.
本文引用的文献
1
First Draft Genome Sequence of the Dourine Causative Agent: Strain OVI.
J Genomics. 2017 Jan 12;5:1-3. doi: 10.7150/jgen.17904. eCollection 2017.
2
Isolation, cultivation and molecular characterization of a new Trypanosoma equiperdum strain in Mongolia.
Parasit Vectors. 2016 Aug 31;9(1):481. doi: 10.1186/s13071-016-1755-3.
3
Companion: a web server for annotation and analysis of parasite genomes.
Nucleic Acids Res. 2016 Jul 8;44(W1):W29-34. doi: 10.1093/nar/gkw292. Epub 2016 Apr 21.
4
Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes.
Parasit Vectors. 2015 Oct 15;8:536. doi: 10.1186/s13071-015-1129-2.
5
Metassembler: merging and optimizing de novo genome assemblies.
Genome Biol. 2015 Sep 24;16:207. doi: 10.1186/s13059-015-0764-4.
6
Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.
PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3404. doi: 10.1371/journal.pntd.0003404. eCollection 2015 Jan.
7
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Diagnosis of dourine in outbreaks in Italy.
Vet Parasitol. 2013 Mar 31;193(1-3):30-8. doi: 10.1016/j.vetpar.2012.12.006. Epub 2012 Dec 20.
10
Efficacy of Cymelarsan and Diminasan against Trypanosoma equiperdum infections in mice and horses.
Vet Parasitol. 2010 Aug 4;171(3-4):200-6. doi: 10.1016/j.vetpar.2010.03.041. Epub 2010 Apr 2.
Zotero 插件