菌株IVM-t1的基因组序列草图
Draft Genome Sequence of Strain IVM-t1.
作者信息
Davaasuren Batdorj, Yamagishi Junya, Mizushima Daiki, Narantsatsral Sandagdorj, Otgonsuren Davaajav, Myagmarsuren Punsantsogvoo, Battsetseg Badgar, Battur Banzragch, Inoue Noboru, Suganuma Keisuke
机构信息
National Research Center for Protozoan Diseases, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido, Japan.
Laboratory of Molecular Genetics, Institute of Veterinary Medicine, Mongolian University of Life Sciences, Ulaanbaatar, Mongolia.
出版信息
Microbiol Resour Announc. 2019 Feb 28;8(9). doi: 10.1128/MRA.01119-18. eCollection 2019 Feb.
Abstract
Trypanosoma equiperdum primarily parasitizes the genital organs and causes dourine in equidae. We isolated a new T. equiperdum strain, T. equiperdum IVM-t1, from the urogenital tract of a horse definitively diagnosed as having dourine in Mongolia. Here, we report the whole-genome sequence, the predicted gene models, and their annotations.
摘要
马媾疫锥虫主要寄生于生殖器官，可引起马科动物的马媾疫。我们从蒙古一匹确诊患有马媾疫的马的泌尿生殖道中分离出一种新的马媾疫锥虫菌株，即马媾疫锥虫IVM-t1。在此，我们报告其全基因组序列、预测的基因模型及其注释。
相似文献
1
Draft Genome Sequence of Strain IVM-t1.菌株IVM-t1的基因组序列草图
Microbiol Resour Announc. 2019 Feb 28;8(9). doi: 10.1128/MRA.01119-18. eCollection 2019 Feb.
2
Isolation, cultivation and molecular characterization of a new Trypanosoma equiperdum strain in Mongolia.蒙古一株新的马媾疫锥虫的分离、培养及分子特征分析
Parasit Vectors. 2016 Aug 31;9(1):481. doi: 10.1186/s13071-016-1755-3.
3
First Draft Genome Sequence of the Dourine Causative Agent: Strain OVI.马媾疫病原体的初稿基因组序列：OVI菌株。
J Genomics. 2017 Jan 12;5:1-3. doi: 10.7150/jgen.17904. eCollection 2017.
4
Pathology of female mice experimentally infected with an in vitro cultured strain of Trypanosoma equiperdum.实验感染体外培养的伊氏锥虫后雌性小鼠的病理学变化。
J Vet Med Sci. 2021 Aug 6;83(8):1212-1218. doi: 10.1292/jvms.21-0056. Epub 2021 Jun 16.
5
The establishment of in vitro culture and drug screening systems for a newly isolated strain of Trypanosoma equiperdum.马媾疫锥虫新分离株体外培养及药物筛选系统的建立。
Int J Parasitol Drugs Drug Resist. 2017 Aug;7(2):200-205. doi: 10.1016/j.ijpddr.2017.04.002. Epub 2017 Apr 13.
6
The current challenges of dourine: difficulties in differentiating Trypanosoma equiperdum within the subgenus Trypanozoon.马媾疫当前面临的挑战：在锥虫亚属内区分马媾疫锥虫存在困难。
Rev Sci Tech. 2003 Dec;22(3):1087-96. doi: 10.20506/rst.22.3.1460.
7
Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes.基于微卫星标记和动基体大环基因的委内瑞拉锥虫属分离株的分子特征及分类
Parasit Vectors. 2015 Oct 15;8:536. doi: 10.1186/s13071-015-1129-2.
8
Histopathological lesions in reproductive organs, distal spinal cord and peripheral nerves of horses naturally infected with Trypanosoma equiperdum.天然感染伊氏锥虫的马的生殖器官、远端脊髓和外周神经的组织病理学病变。
BMC Vet Res. 2019 May 28;15(1):175. doi: 10.1186/s12917-019-1916-7.
9
Validation of a new experimental model for assessing drug efficacy against infection with Trypanosoma equiperdum in horses.一种用于评估药物抗马媾疫锥虫感染疗效的新实验模型的验证
Vet Parasitol. 2018 Nov 15;263:27-33. doi: 10.1016/j.vetpar.2018.10.005. Epub 2018 Oct 9.
10
The evaluation of GM6-based ELISA and ICT as diagnostic methods on a Mongolian farm with an outbreak of non-tsetse transmitted horse trypanosomosis.在一个爆发非采采蝇传播马锥虫病的蒙古农场，对基于GM6的酶联免疫吸附测定（ELISA）和免疫层析试验（ICT）作为诊断方法进行评估。
Vet Parasitol. 2017 Sep 15;244:123-128. doi: 10.1016/j.vetpar.2017.07.036. Epub 2017 Aug 2.
引用本文的文献
1
Detecting complex infections in trypanosomatids using whole genome sequencing.利用全基因组测序检测原生动物中的复杂感染。
BMC Genomics. 2024 Oct 29;25(1):1011. doi: 10.1186/s12864-024-10862-6.
2
Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research.铺路石：大数据对顶复门和动基体目生物研究的贡献。
Front Cell Infect Microbiol. 2022 Jun 6;12:900878. doi: 10.3389/fcimb.2022.900878. eCollection 2022.
3
Bhalin, an Essential Cytoskeleton-Associated Protein of Linking BILBO1 of the Flagellar Pocket Collar with the Hook Complex.巴林，一种将鞭毛袋领的BILBO1与钩复合体连接起来的必需细胞骨架相关蛋白。
Microorganisms. 2021 Nov 11;9(11):2334. doi: 10.3390/microorganisms9112334.
4
Genomics of Trypanosomatidae: Where We Stand and What Needs to Be Done?锥虫科基因组学：我们目前的状况以及需要做些什么？
Pathogens. 2021 Sep 2;10(9):1124. doi: 10.3390/pathogens10091124.
5
Monomorphic : towards reconciling phylogeny and pathologies.单形性：走向系统发育与病理学的和解。
Microb Genom. 2021 Aug;7(8). doi: 10.1099/mgen.0.000632.
6
Comparative analysis of draft genome assemblies developed from whole genome sequences of two isolate samples differing in field virulence on .对从两个在田间毒力上存在差异的分离样本的全基因组序列开发的基因组草图组装进行比较分析。
Biotechnol Rep (Amst). 2021 Jun 22;31:e00653. doi: 10.1016/j.btre.2021.e00653. eCollection 2021 Sep.
7
Nationwide serological surveillance of non-tsetse-transmitted horse trypanosomoses in Mongolia.蒙古国非采采蝇传播马锥虫病的全国血清学监测
Parasite Epidemiol Control. 2020 Jun 25;10:e00158. doi: 10.1016/j.parepi.2020.e00158. eCollection 2020 Aug.
本文引用的文献
1
First Draft Genome Sequence of the Dourine Causative Agent: Strain OVI.马媾疫病原体的初稿基因组序列：OVI菌株。
J Genomics. 2017 Jan 12;5:1-3. doi: 10.7150/jgen.17904. eCollection 2017.
2
Isolation, cultivation and molecular characterization of a new Trypanosoma equiperdum strain in Mongolia.蒙古一株新的马媾疫锥虫的分离、培养及分子特征分析
Parasit Vectors. 2016 Aug 31;9(1):481. doi: 10.1186/s13071-016-1755-3.
3
Companion: a web server for annotation and analysis of parasite genomes.Companion：一个用于寄生虫基因组注释和分析的网络服务器。
Nucleic Acids Res. 2016 Jul 8;44(W1):W29-34. doi: 10.1093/nar/gkw292. Epub 2016 Apr 21.
4
Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes.基于微卫星标记和动基体大环基因的委内瑞拉锥虫属分离株的分子特征及分类
Parasit Vectors. 2015 Oct 15;8:536. doi: 10.1186/s13071-015-1129-2.
5
Metassembler: merging and optimizing de novo genome assemblies.元组装器：合并和优化从头基因组组装
Genome Biol. 2015 Sep 24;16:207. doi: 10.1186/s13059-015-0764-4.
6
Genome and phylogenetic analyses of Trypanosoma evansi reveal extensive similarity to T. brucei and multiple independent origins for dyskinetoplasty.伊氏锥虫的基因组和系统发育分析显示，其与布氏锥虫存在广泛相似性，并且动基体发育不全具有多个独立起源。
PLoS Negl Trop Dis. 2015 Jan 8;9(1):e3404. doi: 10.1371/journal.pntd.0003404. eCollection 2015 Jan.
7
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
8
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.非杂交、基于长读长 SMRT 测序数据的完成微生物基因组组装。
Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.
9
Diagnosis of dourine in outbreaks in Italy.意大利暴发疫情时的传染性脓疱性皮炎诊断。
Vet Parasitol. 2013 Mar 31;193(1-3):30-8. doi: 10.1016/j.vetpar.2012.12.006. Epub 2012 Dec 20.
10
Efficacy of Cymelarsan and Diminasan against Trypanosoma equiperdum infections in mice and horses.硝唑苯砷与二硝托胺对感染马媾疫锥虫的小鼠和马匹的疗效。
Vet Parasitol. 2010 Aug 4;171(3-4):200-6. doi: 10.1016/j.vetpar.2010.03.041. Epub 2010 Apr 2.
Zotero 插件