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采用多种方法研究水溶液中 l-甲硫氨酸分子与 α-糜蛋白酶的相互作用的实验和理论研究。

Experimental and theoretical investigations on the interaction of l-methionine molecules with α-chymotrypsin in the aqueous solution using various methods.

机构信息

Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, P. O. Box.115, Iran.

Department of Biology, Faculty of Science, Shahrekord University, Shahrekord, P. O. Box.115, Iran.

出版信息

Int J Biol Macromol. 2019 Jun 15;131:548-556. doi: 10.1016/j.ijbiomac.2019.03.080. Epub 2019 Mar 13.

Abstract

l-Methionine (l-Met) is one of the necessary amino acids that play unparalleled roles, influencing both the protein structure and metabolism. Understanding the interactions between proteins and small molecules can be realized by various perspectives, and this is significant for the progression of basic sciences and drug development. In this study, the variations in the stability, function, and structure of α-Chymotrypsin (α-Chy) in the presence of l-Met were investigated using spectroscopic and computational approaches. The results of the UV-vis absorption demonstrated that α-Chy had a maximum peak at 280 nm due to the Trp residue. Hyperchromism shift was seen in the presence of l-Met. Ground state system was formed in the presence of l-Met, as confirmed by the fluorescence studies. Fluorescence variations also revealed static quenching. The CD spectra also represented the alteration of the enzyme with an increase in the α-helix and a decrease in the β-sheet. The activity of α-Chy was incremented in the presence of l-Met. Therefore, l-Met served as an activator. Molecular docking results also indicated a negative amount for the Gibbs free energy of the binding of l-Met to the enzyme. α-Chy became more stable in the presence of l-Met, based on the molecular dynamics simulation.

摘要

l-蛋氨酸(l-Met)是一种必需氨基酸,具有不可替代的作用,影响蛋白质的结构和代谢。从不同的角度研究蛋白质与小分子之间的相互作用,对基础科学的发展和药物开发具有重要意义。本研究采用光谱学和计算方法研究了 l-Met 存在时α-糜蛋白酶(α-Chy)的稳定性、功能和结构变化。紫外可见吸收结果表明,由于色氨酸残基的存在,α-Chy 在 280nm 处有最大峰值。存在 l-Met 时会出现增色效应。荧光研究证实,在 l-Met 存在下形成了基态系统。荧光变化也表明存在静态猝灭。圆二色性光谱也表明,随着α-螺旋的增加和β-折叠的减少,酶发生了变化。α-Chy 的活性在 l-Met 的存在下增加。因此,l-Met 作为一种激活剂。分子对接结果也表明,l-Met 与酶结合的吉布斯自由能为负值。基于分子动力学模拟,α-Chy 在 l-Met 的存在下变得更加稳定。

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