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p53 指导有丝分裂后组织中的非凋亡程序。

p53 directs nonapoptotic programs in postmitotic tissue.

机构信息

Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030.

出版信息

Mol Biol Cell. 2019 May 15;30(11):1339-1351. doi: 10.1091/mbc.E18-12-0791. Epub 2019 Mar 20.

Abstract

is the most frequently mutated gene in human cancers, and despite intensive research efforts, genome-scale studies of p53 function in whole animal models are rare. The need for such in vivo studies is underscored by recent challenges to established paradigms, indicating that unappreciated p53 functions contribute to cancer prevention. Here we leveraged the system to interrogate p53 function in a postmitotic context. In the developing embryo, p53 robustly activates important apoptotic genes in response to radiation-induced DNA damage. We recently showed that a p53 enhancer (p53RE) near the cell death gene forms chromatin contacts and enables p53 target activation across long genomic distances. Interestingly, we found that this canonical p53 apoptotic program fails to activate in adult heads. Moreover, this failure to exhibit apoptotic responses was not associated with altered chromatin contacts. Instead, we determined that p53 does not occupy the p53RE enhancer in this postmitotic tissue as it does in embryos. Through comparative RNA-seq and chromatin immunoprecipitation-seq studies of developing and postmitotic tissues, we further determined that p53 regulates distinct transcriptional programs in adult heads, including DNA repair, metabolism, and proteolysis genes. Strikingly, in the postmitotic context, p53-binding landscapes were poorly correlated with nearby transcriptional effects, raising the possibility that p53 enhancers could be generally acting through long distances.

摘要

是人类癌症中突变最频繁的基因,尽管进行了大量的研究工作,但在全动物模型中对 p53 功能进行基因组规模研究仍然很少。最近对既定范式的挑战突显了对这种体内研究的需求,表明未被重视的 p53 功能有助于预防癌症。在这里,我们利用 系统在有丝分裂后环境中探究 p53 功能。在发育中的胚胎中,p53 会在受到辐射诱导的 DNA 损伤时强烈激活重要的凋亡基因。我们最近表明,细胞死亡基因附近的一个 p53 增强子(p53RE)形成染色质接触,并使 p53 靶基因在长基因组距离上激活。有趣的是,我们发现这个经典的 p53 凋亡程序在成年头部无法激活。此外,这种无法表现出凋亡反应的情况与改变的染色质接触无关。相反,我们确定 p53 不会像在胚胎中那样占据这个有丝分裂后组织中的 p53RE 增强子。通过对发育中和有丝分裂后组织进行比较 RNA-seq 和染色质免疫沉淀-seq 研究,我们进一步确定 p53 在成年头部中调节不同的转录程序,包括 DNA 修复、代谢和蛋白水解基因。引人注目的是,在有丝分裂后环境中,p53 结合图谱与附近的转录效应相关性较差,这表明 p53 增强子可能通常通过远距离发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93af/6724604/bb6ea5822c22/mbc-30-1339-g001.jpg

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