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新型 X 射线序列和波斯鲟与星鲟的高铁血红蛋白晶体结构:强调血腔水分子在引发自动氧化中的作用。

Novel X-ray sequences and crystal structures of Persian and Starry sturgeon methemoglobins: Highlighting the role of heme pocket waters in causing autoxidation.

机构信息

Institute of Biochemistry and Biophysics, University of Tehran, P.O. Box 13145-1384, Tehran, Iran.

Institute of Biochemistry and Biophysics, University of Tehran, P.O. Box 13145-1384, Tehran, Iran.

出版信息

Biochim Biophys Acta Proteins Proteom. 2019 Jun;1867(6):586-594. doi: 10.1016/j.bbapap.2019.03.008. Epub 2019 Mar 21.

Abstract

Although there is a high sequence similarity between mammalian and fish hemoglobin (Hb), the oxidation and heme loss rates can vary greatly between them such that fish Hbs oxidise much more rapidly than mammalian Hbs. There is to date no sequence or structural data for any sturgeon Hb to reveal the level of autoxidation in these fish. In this study, novel high resolution X-ray sequences and crystal structures of methemoglobin (Met-Hb) from two sturgeon fish including Persian sturgeon (Acipenser percisus) and Starry sturgeon (Acipenser stellatus) belonging to the Caspian sea has been determined. A comprehensive sequence and structure comparison between these sturgeon Met-Hbs and a number of non-sturgeon and normal and sickle cell anaemia human Hb in varying heme states has been carried out highlighting (i) the structural variability in the heme propionate groups; (ii) the existence of certain residues or their displacement and shift in the heme pocket allowing entry of water molecules into the heme pocket; (iii) the importance of the number of water molecules in the heme pocket; (iv) the hydrogen bonding between oxygens of A and D propionate groups and that of waters in the heme pocket; and (v) the role of heme binding waters causing oxidative stress and heme autoxidation.

摘要

尽管哺乳动物和鱼类血红蛋白 (Hb) 之间存在高度的序列相似性,但它们的氧化和血红素损失速率可能有很大差异,以至于鱼类 Hb 的氧化速度比哺乳动物 Hb 快得多。迄今为止,还没有任何鲟鱼 Hb 的序列或结构数据可以揭示这些鱼类的自氧化水平。在这项研究中,我们测定了来自两种鲟鱼(包括里海鲟鱼 (Acipenser persisus) 和星鲟鱼 (Acipenser stellatus))的高铁血红蛋白 (Met-Hb) 的新型高分辨率 X 射线序列和晶体结构。对这些鲟鱼 Met-Hb 与一些非鲟鱼和正常及镰状细胞贫血人类 Hb 在不同血红素状态下的序列和结构进行了全面比较,突出了:(i) 原卟啉丙酸基团的结构可变性;(ii) 存在某些残基或其在血红素口袋中的位移和移动,允许水分子进入血红素口袋;(iii) 血红素口袋中水分子数量的重要性;(iv) A 和 D 丙酸基团氧与血红素口袋中水之间的氢键;以及 (v) 血红素结合水导致氧化应激和血红素自氧化的作用。

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