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基因组范围内鉴定和特征分析花鲈(Lateolabrax maculatus)葡萄糖转运体(glut)基因及其在短期饥饿期间对肝脏表达的调控

Genome-wide identification and characterization of glucose transporter (glut) genes in spotted sea bass (Lateolabrax maculatus) and their regulated hepatic expression during short-term starvation.

机构信息

The Key Laboratory of Mariculture (Ocean University of China), Ministry of Education, Qingdao 266003, PR China.

Fujian Collaborative Innovation Centre for Exploitation and Utilization of Marine Biological Resources, College of Ocean and Earth Sciences, Xiamen University, Xiamen 361102, PR China.

出版信息

Comp Biochem Physiol Part D Genomics Proteomics. 2019 Jun;30:217-229. doi: 10.1016/j.cbd.2019.03.007. Epub 2019 Mar 19.

Abstract

The glucose transporters (GLUTs) are well known for their essential roles in moving the key metabolites, glucose, galactose, fructose and a number of other important substrates in and out of cells. In this study, we identified a total of 21 glut genes in spotted sea bass (Lateolabrax maculatus) through extensive data mining of existing genomic and transcriptomic databases. Glut genes of spotted sea bass were classified into three subfamilies (Class I, Class II and Class III) according to the phylogenetic analysis. Glut genes of spotted sea bass were distributed in 15 out of 24 chromosomes. Deduced gene structure analysis including the secondary structure and the three-dimensional structures, as well as the syntenic analysis further supported their annotations and orthologies. Expression profile in healthy tissues indicated that 9 of 21 glut genes were expressed in liver of spotted sea bass. During short-term starvation, the mRNA expression levels of 3 glut genes (glut2, glut5, and glut10) were significantly up-regulated in liver (P < 0.05), indicating their potential roles in sugar transport and consumption. These findings in our study will facilitate the further evolutionary characterization of glut genes in fish species and provide a theoretical basis for their functional study.

摘要

葡萄糖转运蛋白(GLUTs)在将葡萄糖、半乳糖、果糖和许多其他重要底物进出细胞的关键代谢物方面发挥着重要作用。在这项研究中,我们通过对现有基因组和转录组数据库的广泛数据挖掘,共鉴定出 21 个斑点鲈鱼(Lateolabrax maculatus)的glut 基因。根据系统发育分析,斑点鲈鱼的 glut 基因分为三个亚家族(I 类、II 类和 III 类)。斑点鲈鱼的 glut 基因分布在 24 条染色体中的 15 条上。推导的基因结构分析包括二级结构和三维结构,以及共线性分析进一步支持了它们的注释和同源性。在健康组织中的表达谱表明,21 个 glut 基因中有 9 个在鲈鱼肝脏中表达。在短期饥饿期间,3 个 glut 基因(glut2、glut5 和 glut10)的 mRNA 表达水平在肝脏中显著上调(P<0.05),表明它们在糖转运和消耗中的潜在作用。我们的研究结果将有助于进一步研究鱼类 glut 基因的进化特征,并为它们的功能研究提供理论基础。

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