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多尺度模拟人类卷曲蛋白受体和 Taste2 G 蛋白偶联受体。

Multiscale simulations on human Frizzled and Taste2 GPCRs.

机构信息

Computational Biomedicine, Institute for Advanced Simulations IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH, Jülich, Germany; Cécile and Oskar Vogt Institute for Brain Research, Medical Faculty, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.

Computational Biomedicine, Institute for Advanced Simulations IAS-5 and Institute of Neuroscience and Medicine INM-9, Forschungszentrum Jülich GmbH, Jülich, Germany; Department of Biotechnology, University of Verona, Verona, Italy.

出版信息

Curr Opin Struct Biol. 2019 Apr;55:8-16. doi: 10.1016/j.sbi.2019.02.009. Epub 2019 Mar 29.

Abstract

Recently, molecular dynamics simulations, from all atom and coarse grained to hybrid methods bridging the two scales, have provided exciting functional insights into class F (Frizzled and Taste2) GPCRs (about 40 members in humans). Findings include: (i) The activation of one member of the Frizzled receptors (FZD4) involves a bending of transmembrane helix TM7 far larger than that in class A GPCRs. (ii) The affinity of an anticancer drug targeting another member (Smoothened receptor) decreases in a specific drug-resistant variant, because the mutation ultimately disrupts the binding cavity and affects TM6. (iii) A novel two-state recognition mechanism explains the very large agonist diversity for at least one member of the Taste2 GPCRs, hTAS2R46.

摘要

最近,从全原子和粗粒到混合方法的分子动力学模拟,在两个尺度之间架起了桥梁,为 F 类(Frizzled 和 Taste2)GPCR (人类约有 40 个成员)提供了令人兴奋的功能见解。研究结果包括:(i)Frizzled 受体(FZD4)的一种成员的激活涉及跨膜螺旋 TM7 的弯曲程度远大于 A 类 GPCR 的弯曲程度。(ii)针对另一种成员(Smoothened 受体)的抗癌药物的亲和力在特定的耐药变体中降低,因为该突变最终破坏了结合腔并影响 TM6。(iii)一种新的两态识别机制解释了至少一种 Taste2 GPCR(hTAS2R46)的非常大的激动剂多样性。

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