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通过流式细胞术估算印度茶树品种的核DNA含量及其变异

Estimation of nuclear DNA content and its variation among Indian Tea accessions by flow cytometry.

作者信息

Sharma Suman, Kaushik Sandeep, Raina Soom Nath

机构信息

1Department of Botany, Ramjas College, University of Delhi, New Delhi, Delhi 110007 India.

2Department of Environmental Science, Indira Gandhi National Tribal University, Lalpur, Amarkantak, Madhya Pradesh 484887 India.

出版信息

Physiol Mol Biol Plants. 2019 Mar;25(2):339-346. doi: 10.1007/s12298-018-0587-3. Epub 2018 Aug 11.

Abstract

Nuclear DNA content and genome size variation among 36 Indian tea accessions were analyzed by flow cytometry. Initial standardization of protocols for isolation of nuclei, DNA staining and selection of an internal standard for tea accessions which have significantly high amount of phenolic secondary metabolites in their cytosol was carried out. Results obtained revealed that 2C DNA content of Indian tea is 7.46 pg which corresponds to 1C genome size of 3673 Mb. Inter accession variation in 2C DNA content was also observed among 35 diploid taxa ranging from 7.23 to 7.73 pg which was significant at 1% probability level. The 2C DNA content of triploid (UPASI 3) was observed to be 11.47 pg which is concurrent with the expected value. Results obtained showed that Assam and Cambod type tea accession have higher 2C DNA content of 7.73 pg whereas Assam Cambod hybrids and Assam China hybrids have reduction in DNA content with 2C amounts, 7.23 and 7.32 pg DNA respectively. The present study suggests that the species involved in origin of Indian tea must have differed in their genome sizes owing to significant inter accession variation in nuclear DNA content.

摘要

通过流式细胞术分析了36份印度茶种质的核DNA含量和基因组大小变异。针对细胞质中酚类次生代谢物含量显著较高的茶种质,对细胞核分离、DNA染色及内标选择的方案进行了初步标准化。所得结果显示,印度茶的2C DNA含量为7.46 pg,对应1C基因组大小为3673 Mb。在35个二倍体分类群中也观察到2C DNA含量的种内变异,范围为7.23至7.73 pg,在1%概率水平上具有显著性。三倍体(UPASI 3)的2C DNA含量为11.47 pg,与预期值一致。所得结果表明,阿萨姆型和柬埔寨型茶种质的2C DNA含量较高,为7.73 pg,而阿萨姆柬埔寨杂种和阿萨姆中国杂种的DNA含量降低,2C含量分别为7.23和7.32 pg。本研究表明,由于核DNA含量存在显著的种内变异,参与印度茶起源的物种其基因组大小必定存在差异。

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