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LurR 是硫酸盐还原脱硫弧菌属中中央乳酸氧化途径的调节因子。

LurR is a regulator of the central lactate oxidation pathway in sulfate-reducing Desulfovibrio species.

机构信息

Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

Department of Biochemistry, University of Missouri, Columbia, Missouri, United States of America.

出版信息

PLoS One. 2019 Apr 9;14(4):e0214960. doi: 10.1371/journal.pone.0214960. eCollection 2019.

Abstract

The central carbon/lactate utilization pathway in the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough, is encoded by the highly conserved operon DVU3025-3033. Our earlier in vitro genome-wide study had suggested a network of four two-component system regulators that target this large operon; however, how these four regulators control this operon was not known. Here, we probe the regulation of the lactate utilization operon with mutant strains and DNA-protein binding assays. We show that the LurR response regulator is required for optimal growth and complete lactate utilization, and that it activates the DVU3025-3033 lactate oxidation operon as well as DVU2451, a lactate permease gene, in the presence of lactate. We show by electrophoretic mobility shift assays that LurR binds to three sites in the upstream region of DVU3025, the first gene of the operon. NrfR, a response regulator that is activated under nitrite stress, and LurR share similar binding site motifs and bind the same sites upstream of DVU3025. The DVU3025 promoter also has a binding site motif (Pho box) that is bound by PhoB, a two-component response regulator activated under phosphate limitation. The lactate utilization operon, the regulator LurR, and LurR binding sites are conserved across the order Desulfovibrionales whereas possible modulation of the lactate utilization genes by additional regulators such as NrfR and PhoB appears to be limited to D. vulgaris.

摘要

模式硫酸盐还原菌脱硫弧菌中,中央碳/乳酸利用途径由高度保守的操纵子 DVU3025-3033 编码。我们之前的体外全基因组研究表明,有一个由四个双组分系统调节因子组成的网络,它们靶向这个大操纵子;然而,这些调节因子如何控制这个操纵子尚不清楚。在这里,我们通过突变株和 DNA-蛋白结合实验来研究乳酸利用操纵子的调控。我们表明,LurR 响应调节剂对于最佳生长和完全乳酸利用是必需的,并且它在存在乳酸的情况下激活乳酸氧化操纵子 DVU3025-3033 以及乳酸渗透酶基因 DVU2451。通过电泳迁移率变动分析,我们表明 LurR 结合到操纵子第一个基因 DVU3025 的上游区域的三个位点。NrfR 是一种在亚硝酸盐应激下被激活的响应调节剂,它与 LurR 共享相似的结合位点基序,并与 DVU3025 上游的相同位点结合。DVU3025 启动子也有一个结合位点基序(Pho 盒),它由 PhoB 结合,PhoB 是一种在磷酸盐限制下被激活的双组分响应调节剂。乳酸利用操纵子、调节因子 LurR 和 LurR 结合位点在脱硫弧菌目中是保守的,而其他调节因子(如 NrfR 和 PhoB)对乳酸利用基因的可能调节似乎仅限于脱硫弧菌。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3783/6456213/320e5478098d/pone.0214960.g001.jpg

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