来自肯尼亚锡亚亚县转诊医院的两株沃氏葡萄球菌临床分离株SMA0023 - 04（UGA3）和SMA0670 - 05（UGA28）的基因组序列草图
Draft Genome Sequences of Two Staphylococcus warneri Clinical Isolates, Strains SMA0023-04 (UGA3) and SMA0670-05 (UGA28), from Siaya County Referral Hospital, Siaya, Kenya.
作者信息
Xie Gary, Cheng Qiuying, Daligault Hajnalka, Davenport Karen, Gleasner Cheryl, Jacobs Lindsey, Kubicek-Sutherland Jessica, LeCuyer Tessa, Otieno Vincent, Raballah Evans, Doggett Norman, Mukundan Harshini, Perkins Douglas J, McMahon Benjamin
机构信息
Biosecurity and Public Health, Bioscience Division, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Center for Global Health, Department of Internal Medicine, University of New Mexico Health Sciences Center, Albuquerque, New Mexico, USA.
出版信息
Microbiol Resour Announc. 2019 Apr 11;8(15):e01595-18. doi: 10.1128/MRA.01595-18.
Abstract
We report the complete draft genome sequences of two clinical isolates, strains SMA0023-04 (UGA3) and SMA0670-05 (UGA28), each of which contains one chromosome and at least one plasmid. Isolate SMA0023-04 (UGA3) contains tetracycline efflux major facilitator superfamily (MFS) transporter (), macrolide resistance ( and ), and beta-lactamase () genes on its plasmids.
摘要
我们报告了两株临床分离株SMA0023 - 04（UGA3）和SMA0670 - 05（UGA28）的完整基因组草图序列，每株均包含一条染色体和至少一个质粒。分离株SMA0023 - 04（UGA3）在其质粒上含有四环素外排主要易化子超家族（MFS）转运蛋白、大环内酯抗性基因以及β - 内酰胺酶基因。
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本文引用的文献
1
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J Clin Microbiol. 2021 Nov 18;59(12):e0021321. doi: 10.1128/JCM.00213-21. Epub 2021 Sep 22.
2
Rapid evaluation and quality control of next generation sequencing data with FaQCs.使用FaQCs对下一代测序数据进行快速评估和质量控制。
BMC Bioinformatics. 2014 Nov 19;15(1):366. doi: 10.1186/s12859-014-0366-2.
3
Complete Genome of the Solvent-Tolerant Staphylococcus warneri Strain SG1.耐溶剂华纳葡萄球菌菌株SG1的全基因组
Genome Announc. 2013 Mar 14;1(2):e0003813. doi: 10.1128/genomeA.00038-13.
4
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth.IDBA-UD：一个用于具有高度不均匀深度的单细胞和宏基因组测序数据的从头组装程序。
Bioinformatics. 2012 Jun 1;28(11):1420-8. doi: 10.1093/bioinformatics/bts174. Epub 2012 Apr 11.
5
Ergatis: a web interface and scalable software system for bioinformatics workflows.Ergatis：一个用于生物信息学工作流程的网络界面和可扩展软件系统。
Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22.
6
An Ergatis-based prokaryotic genome annotation web server.基于 Ergatis 的原核生物基因组注释网络服务器。
Bioinformatics. 2010 Apr 15;26(8):1122-4. doi: 10.1093/bioinformatics/btq090. Epub 2010 Mar 1.
7
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8
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9
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