Kihara Institute for Biological Research Yokohama City University Yokohama Japan.
International Center for Tropical Agriculture (CIAT) Valle del Cauca Colombia.
FEBS Open Bio. 2019 Feb 20;9(4):814-825. doi: 10.1002/2211-5463.12561. eCollection 2019 Apr.
We developed and modified a precise, rapid, and reproducible protocol isolating high-quality RNA from tissues of multiple varieties of cassava plants ( Crantz). The resulting method is suitable for use in mini, midi, and maxi preparations and rapidly achieves high total RNA yields (170-600 μg·g) using low-cost chemicals and consumables and with minimal contamination from polysaccharides, polyphenols, proteins, and other secondary metabolites. In particular, : ratios were > 2.0 for RNA from various tissues, and all of the present RNA samples yielded ribosomal integrity number values of greater than six. The resulting high purity and quality of isolated RNA will facilitate downstream applications (quantitative reverse transcriptase-polymerase chain reaction or RNA sequencing) in cassava molecular breeding.
我们开发并改进了一种精确、快速且可重复的方法,从多种木薯植物(Manihot esculenta Crantz)的组织中分离高质量的 RNA。该方法适用于小型、中型和大型制备,使用低成本的化学试剂和耗材,快速获得高总 RNA 产量(170-600μg·g),多糖、多酚、蛋白质和其他次生代谢物的污染最小。特别是,来自各种组织的 RNA 的 A260/A280 比值均大于 2.0,并且所有当前的 RNA 样品的核糖体完整性数均大于 6。分离的 RNA 的高纯度和高质量将有助于木薯分子育种中的下游应用(定量逆转录聚合酶链反应或 RNA 测序)。