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谷胱甘肽二硫化物的多重离解常数:从头算 MD 模拟解析实验 pH 滴定曲线。

The multiple dissociation constants of glutathione disulfide: interpreting experimental pH-titration curves with ab initio MD simulations.

机构信息

Department of Inorganic and Physical Chemistry, IISc, Bangalore, India.

出版信息

Phys Chem Chem Phys. 2019 May 8;21(18):9212-9217. doi: 10.1039/c9cp00761j.

Abstract

The hexapeptide glutathione disulfide (GSSG) has six ionizable groups with six associated dissociation constants. The experimentally measured pH-titration curve, however, does not exhibit the six corresponding equivalence points and bears little resemblance to standard textbook examples of acid-base pH-titration curves. The curve highlights the difficulties in determining multiple pKa values of polyprotic acids - typically proteins and peptides - from experiment. The six pKa values of GSSG can, however, be estimated using Car-Parrinello molecular dynamics (CPMD) simulations in conjunction with metadynamics sampling of the underlying free energy landscape of the dissociation reactions. Ab initio MD simulations were performed on a GSSG molecule solvated by 200 water molecules. Using the estimated pKa values the theoretical titration curve was calculated and found to be in good agreement with experiment. The results clearly highlight how dissociation constants estimated from ab initio MD simulations can facilitate the interpretation of the pH-titration curves of complex chemical and biological systems.

摘要

六肽谷胱甘肽二硫化物 (GSSG) 有六个可离子化基团和六个相关的离解常数。然而,实验测量的 pH 滴定曲线并没有表现出六个相应的当量点,与酸碱 pH 滴定曲线的标准教科书示例也没有什么相似之处。该曲线突出了从实验确定多质子酸(通常是蛋白质和肽)的多个 pKa 值的困难。然而,使用 Car-Parrinello 分子动力学 (CPMD) 模拟并结合离解反应的基础自由能景观的元动力学采样,可以估计 GSSG 的六个 pKa 值。对 200 个水分子溶剂化的 GSSG 分子进行了 ab initio MD 模拟。使用估计的 pKa 值计算了理论滴定曲线,并发现与实验结果吻合良好。结果清楚地强调了如何从 ab initio MD 模拟中估计的离解常数有助于解释复杂化学和生物系统的 pH 滴定曲线。

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