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全外显子组测序揭示中国儿科扩张型心肌病患者的新遗传变异。

Whole-Exome Sequencing Reveals Novel Genetic Variation for Dilated Cardiomyopathy in Pediatric Chinese Patients.

作者信息

Dai Genyin, Pu Zhening, Cheng Xueying, Yin Jie, Chen Jun, Xu Ting, Zhang Han, Li Zewei, Chen Xuan, Chen Jinlong, Qin Yuming, Yang Shiwei

机构信息

Department of Cardiology, Children's Hospital of Nanjing Medical University, 72 Guangzhou Road, Nanjing, 210008, China.

Center of Clinical Research, Wuxi People's Hospital of Nanjing Medical University, Wuxi, 214023, China.

出版信息

Pediatr Cardiol. 2019 Jun;40(5):950-957. doi: 10.1007/s00246-019-02096-1. Epub 2019 Apr 16.

Abstract

Dilated cardiomyopathy (DCM) is characterized by left or bilateral ventricular dilation and systolic dysfunction without rational conditions, which can lead to progressive heart failure and sudden cardiac death. Most of the pathogenic genes have been reported in adult population by locus mapping in familial cases and animal model studies. However, it still remains challenging to decipher the role of genetics in the etiology of pediatric DCM. We applied whole-exome sequencing (WES) for 30 sporadic pediatric DCM subjects and 100 non-DCM local controls. We identified the pathogenic mutations using bioinformatics tools based on genomic strategies synergistically and confirmed mutations by Sanger sequencing. We identified compound heterozygous nonsense mutations in DSP (c.3799C > T, p.R1267X; c.4444G > T, p.E1482X). In sporadic cases, the two heterozygous mutations in XIRP2 were identified. Then we performed an exome-wide association study with 30 case and 100 control subjects. Interestingly, we could not identify TTN truncating variants in all cases. Collectively, we observed a significant risk signal between carriers of TTN deleterious missense variants and DCM risk (odds ratio 4.0, 95% confidence interval 1.1-22.2, p = 3.12 × 10). Our observations expanded the spectrum of mutations and were valuable in the pre- and postnatal screening and genetic diagnosis for DCM.

摘要

扩张型心肌病(DCM)的特征是左心室或双侧心室扩张以及收缩功能障碍,且无合理病因,可导致进行性心力衰竭和心源性猝死。在家族性病例和动物模型研究中,通过基因定位已在成年人群中报道了大多数致病基因。然而,解读遗传学在儿童DCM病因中的作用仍然具有挑战性。我们对30例散发性儿童DCM患者和100名非DCM本地对照进行了全外显子组测序(WES)。我们基于基因组策略协同使用生物信息学工具鉴定致病突变,并通过桑格测序确认突变。我们在DSP中鉴定出复合杂合性无义突变(c.3799C>T,p.R1267X;c.4444G>T,p.E1482X)。在散发性病例中,鉴定出XIRP2中的两个杂合突变。然后我们对30例病例和100名对照进行了全外显子组关联研究。有趣的是,我们在所有病例中均未鉴定出TTN截短变体。总体而言,我们观察到TTN有害错义变体携带者与DCM风险之间存在显著风险信号(优势比4.0,95%置信区间1.1-22.2,p = 3.12×10)。我们的观察结果扩展了突变谱,对DCM的产前和产后筛查及基因诊断具有重要价值。

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