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metaFALCON:一个使用多态元动力学自动采样锥形交叉缝的程序包。

metaFALCON: A Program Package for Automatic Sampling of Conical Intersection Seams Using Multistate Metadynamics.

作者信息

Lindner Joachim O, Sultangaleeva Karina, Röhr Merle I S, Mitrić Roland

机构信息

Institut für Physikalische und Theoretische Chemie , Julius-Maximilians-Universität Würzburg , Emil-Fischer-Str. 42 , 97074 Würzburg , Germany.

Center for Nanosystems Chemistry (CNC) , Julius-Maximilians-Universität Würzburg , Theodor-Boveri-Weg , 97074 Würzburg , Germany.

出版信息

J Chem Theory Comput. 2019 Jun 11;15(6):3450-3460. doi: 10.1021/acs.jctc.9b00029. Epub 2019 Apr 29.

Abstract

The multistate metadynamics for automatic exploration of conical intersection seams and systematic location of minimum energy crossing points in molecular systems and its implementation into the software package metaFALCON is presented. Based on a locally modified energy gap between two Born-Oppenheimer electronic states as a collective variable, multistate metadynamics trajectories are driven toward an intersection point starting from an arbitrary ground state geometry and are subsequently forced to explore the conical intersection seam landscape. For this purpose, an additional collective variable capable of distinguishing structures within the seam needs to be defined and an additional bias is introduced into the off-diagonal elements of an extended (multistate) electronic Hamiltonian. We demonstrate the performance of the algorithm on the examples of the 1,3-butadiene, benzene, and 9H-adenine molecules, where multiple minimum energy crossing points could be systematically located using the Wiener number or Cremer-Pople parameters as collective variables. Finally, with the example of 9H-adenine, we show that the multistate metadynamics potential can be used to obtain a global picture of a conical intersection seam. Our method can be straightforwardly connected with any ab initio or semiempirical electronic structure theory that provides energies and gradients of the respective electronic states and can serve for systematic elucidation of the role of conical intersections in the photophysics and photochemistry of complex molecular systems, thus complementing nonadiabatic dynamics simulations.

摘要

本文介绍了用于自动探索分子系统中锥形交叉缝和系统定位最小能量交叉点的多态元动力学方法及其在软件包metaFALCON中的实现。基于两个玻恩-奥本海默电子态之间局部修正的能隙作为集体变量,多态元动力学轨迹从任意基态几何结构出发朝着交叉点驱动,随后被迫探索锥形交叉缝景观。为此,需要定义一个能够区分缝内结构的额外集体变量,并在扩展(多态)电子哈密顿量的非对角元素中引入额外的偏置。我们以1,3 - 丁二烯、苯和9H - 腺嘌呤分子为例展示了该算法的性能,其中使用维纳数或克雷默 - 波普参数作为集体变量可以系统地定位多个最小能量交叉点。最后,以9H - 腺嘌呤为例,我们表明多态元动力学势可用于获得锥形交叉缝的全局图像。我们的方法可以直接与任何提供相应电子态能量和梯度的从头算或半经验电子结构理论相连接,并可用于系统阐明锥形交叉在复杂分子系统的光物理和光化学中的作用,从而补充非绝热动力学模拟。

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