Fang Hui, Lü Changjiang, Hua Yujiao, Hu Sheng, Zhao Weirui, Fang Wenji, Song Kui, Huang Jun, Mei Lehe
School of Biological and Chemical Engineering, Zhejiang University of Science and Technology, Hangzhou 310023, Zhejiang, China.
Department of Biological and Pharmaceutical Engineering, Ningbo Institute of Technology, Zhejiang University, Ningbo 315100, Zhejiang, China.
Sheng Wu Gong Cheng Xue Bao. 2019 Apr 25;35(4):636-646. doi: 10.13345/j.cjb.180390.
Glutamate decarboxylase, a unique pyridoxal 5'-phosphate-dependent enzyme, catalyzes α-decarboxylation of L-glutamate to γ-aminobutyrate. However, glutamate decarboxylase from different sources has the common problem of poor thermostability that affects its application in industry. In this study, proline was introduced at 13 different positions in glutamate decarboxylase by using the design strategy of homologous sequence alignment between Thermococcus kodakarensis and Lactobacillus brevis CGMCC No.1306. A mutant enzyme G364P with higher thermostability was obtained. Compared to the wild type, thermostability of the mutant G364P was significantly improved, the half-life time (t1/2) at 55 °C and the semi-inactivation temperature (T₅₀ ¹⁵) of the mutant G364P increased 19.4 min and 5.3 °C, respectively, while kcat/Km of the mutant enzyme remained nearly unchanged. Further analysis of their thermostability by molecular dynamics simulations were performed. The root mean square deviation of G364P and root mean square fluctuation in the loop region including G364 were lower than the wild type at 313 K for 10 ns, and G364P increased one hydrophobic interaction in the loop region. It proves that mutation of flexible 364-Gly to rigid proline endows glutamate decarboxylase with enhanced thermostability.
谷氨酸脱羧酶是一种独特的依赖于磷酸吡哆醛5'-磷酸的酶,催化L-谷氨酸α-脱羧生成γ-氨基丁酸。然而,来自不同来源的谷氨酸脱羧酶存在热稳定性差的普遍问题,这影响了其在工业中的应用。在本研究中,通过利用嗜热栖热菌和短乳杆菌CGMCC No.1306之间的同源序列比对设计策略,在谷氨酸脱羧酶的13个不同位置引入脯氨酸。获得了一种热稳定性更高的突变酶G364P。与野生型相比,突变体G364P的热稳定性显著提高,在55℃下的半衰期(t1/2)和半失活温度(T₅₀ ¹⁵)分别增加了19.4分钟和5.3℃,而突变酶的kcat/Km几乎保持不变。通过分子动力学模拟对它们的热稳定性进行了进一步分析。在313K下10 ns时,G364P的均方根偏差和包括G364在内的环区域的均方根波动低于野生型,并且G364P在环区域增加了一种疏水相互作用。这证明将柔性的364-甘氨酸突变为刚性的脯氨酸赋予了谷氨酸脱羧酶增强的热稳定性。