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基于光谱和量子/经典力学的计算研究比较了穿心莲内酯及其衍生物抑制一氧化氮合酶的能力。

Spectroscopic and quantum/classical mechanics based computational studies to compare the ability of Andrographolide and its derivative to inhibit Nitric Oxide Synthase.

机构信息

Department of Physics, Madras Christian College, East Tambaram 600059, Tamil Nadu, India.

Department of Physics, Arignar Anna Govt. Arts College, Cheyyar 604407, Tamil Nadu, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2019 Jul 5;218:374-387. doi: 10.1016/j.saa.2019.04.040. Epub 2019 Apr 18.

Abstract

The inhibition of the enzyme Nitric Oxide Synthase by a bioactive compounds results in it possessing anti-inflammatory property. The ability of Andrographolide and its derivative Isoandrographolide to inhibit Nitric Oxide Synthase was studied using computational and experimental techniques. A combination of UV Spectroscopic and DFT computational techniques were used to calculate the molecular descriptors of the title compounds which were used to establish relationship with its biological activity. The drug-likeness of the compounds was estimated using Lipinski's rule. Molecular dynamics and docking studies were carried out to test for the structural and energetic favourability of the title compounds(ligand) being bound to Nitric Oxide Synthase(Protein) to induce inhibition. The force constant data obtained from IR spectroscopy was used in aid to parametrize force fields used in molecular dynamics simulation. The DFT method was used to perform NBO analysis that revealed the charge transfer interactions responsible for its biological properties. The Molecular Electrostatic Potential (MEP) plot revealed the regions of electrophilic and nucleophilic reactivity of the title compounds. MTT (3-(4, 5-dimethyl thiazolyl-2)-2, 5-diphenyltetrazolium bromide) assay was carried out which revealed the cytotoxicity at different concentrations of the title compounds by which means the biologically safe concentration was determined and therefore at this biologically safe concentration the ability of the compounds to inhibit Nitric Oxide formation was determined. Quantitative Structure-Activity Studies (QSAR) were used to furnish relationship between molecular descriptors and the Nitric Oxide Synthase inhibition activity resulting in anti-inflammatory property, based on the chosen molecular descriptors suggestions were made for the search of more potent Nitric Oxide Synthase inhibitors in the Andrographolide derivative family of compounds.

摘要

生物活性化合物对一氧化氮合酶的抑制作用使其具有抗炎特性。本研究采用计算和实验技术研究了穿心莲内酯及其衍生物异穿心莲内酯抑制一氧化氮合酶的能力。采用紫外光谱和密度泛函理论(DFT)计算技术相结合的方法,计算了标题化合物的分子描述符,并将其与生物活性建立了关系。利用 Lipinski 规则估计了化合物的类药性。进行了分子动力学和对接研究,以测试标题化合物(配体)与一氧化氮合酶(蛋白质)结合的结构和能量有利性,从而诱导抑制作用。从红外光谱获得的力常数数据用于辅助参数化分子动力学模拟中使用的力场。DFT 方法用于进行 NBO 分析,揭示了负责其生物特性的电荷转移相互作用。分子静电势 (MEP) 图揭示了标题化合物的亲电和亲核反应性区域。进行了 MTT(3-(4,5-二甲基噻唑基-2)-2,5-二苯基四唑溴盐)测定,该测定揭示了不同浓度的标题化合物的细胞毒性,由此确定了生物安全浓度,因此在该生物安全浓度下,测定了化合物抑制一氧化氮形成的能力。定量构效关系(QSAR)用于提供分子描述符与一氧化氮合酶抑制活性之间的关系,从而产生抗炎特性,基于所选分子描述符的建议,在穿心莲内酯衍生物化合物家族中寻找更有效的一氧化氮合酶抑制剂。

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