• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

蛭纲(环节动物门:寡毛纲:蛭目:水蛭科)的转录组学与差异基因表达:摄食与禁食模式的对比

Transcriptomics and differential gene expression in (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes.

作者信息

Khan Muhammad Salabat, Guan De-Long, Kvist Sebastian, Ma Li-Bin, Xie Juan-Ying, Xu Sheng-Quan

机构信息

College of Life Sciences Shaanxi Normal University Xi'an China.

Department of Ecology and Evolutionary Biology University of Toronto Toronto Ontario Canada.

出版信息

Ecol Evol. 2019 Mar 18;9(8):4706-4719. doi: 10.1002/ece3.5074. eCollection 2019 Apr.

DOI:10.1002/ece3.5074
PMID:31031937
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6476756/
Abstract

The medicinal utility of leeches has been demonstrated through decades of use in modern hospital settings, mainly as relievers of venous congestion following flap or digit replantation surgery. In the present study, we sequence and annotate (through BLAST- and Gene Ontology-based approaches) the salivary transcriptome of the nonblood feeding hirudinid and assess the differential gene expression of anticoagulation factors (through both quantitative real-time PCR [qRT-PCR] and in silico-based methods) during feeding and fasting conditions. This was done in order to evince the diversity of putative anticoagulation factors, as well as estimate the levels of upregulation of genes immediately after feeding. In total, we found sequences with demonstrated orthology (via both phylogenetic analyses and BLAST-based approaches) to seven different proteins that have previously been linked to anticoagulatory capabilities-eglin C, bdellin, granulin, guamerin, hyaluronidase, destabilase I, and lipocalin. All of these were recovered from leeches both in the fasting and in the feeding conditions, but all show signs of upregulation in the feeding leeches. Interestingly, our RNA-seq effort, coupled with a hypergeometric test, indicated that the differentially expressed genes were disproportionately involved in three main immunological pathways (endocytosis, peroxisome regulation, and lysosome regulation). The results and implications of the finding of anticoagulants in this nonblood feeding leech and the putative upregulation of anticoagulation factors after feeding are briefly discussed in an evolutionary context.

摘要

数十年来,水蛭在现代医院环境中的药用价值已得到证实,主要用于缓解皮瓣或断指再植手术后的静脉淤血。在本研究中,我们对非吸血水蛭的唾液转录组进行了测序和注释(通过基于BLAST和基因本体论的方法),并评估了进食和禁食条件下抗凝因子的差异基因表达(通过定量实时PCR [qRT-PCR]和基于计算机模拟的方法)。这样做是为了揭示假定的抗凝因子的多样性,并估计进食后基因的上调水平。我们总共发现了与七种不同蛋白质具有直系同源性的序列(通过系统发育分析和基于BLAST的方法),这些蛋白质先前已与抗凝能力相关——依格林C、蛭素、颗粒蛋白、瓜美蛋白、透明质酸酶、去稳定酶I和脂蛋白。所有这些在禁食和进食条件下的水蛭中均有发现,但在进食的水蛭中均显示出上调的迹象。有趣的是,我们的RNA测序工作结合超几何检验表明,差异表达基因在三个主要免疫途径(内吞作用、过氧化物酶体调节和溶酶体调节)中不成比例地参与。在进化背景下简要讨论了在这种非吸血水蛭中发现抗凝剂以及进食后抗凝因子假定上调的结果和意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/a440732d3f26/ECE3-9-4706-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/88f88728aead/ECE3-9-4706-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/ecf70f3f1632/ECE3-9-4706-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/d492c2ab6595/ECE3-9-4706-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/72889d2f4ddf/ECE3-9-4706-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/a707de75858c/ECE3-9-4706-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/bacf14db909c/ECE3-9-4706-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/3528976aa7c1/ECE3-9-4706-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/a440732d3f26/ECE3-9-4706-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/88f88728aead/ECE3-9-4706-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/ecf70f3f1632/ECE3-9-4706-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/d492c2ab6595/ECE3-9-4706-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/72889d2f4ddf/ECE3-9-4706-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/a707de75858c/ECE3-9-4706-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/bacf14db909c/ECE3-9-4706-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/3528976aa7c1/ECE3-9-4706-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fb6/6476756/a440732d3f26/ECE3-9-4706-g008.jpg

相似文献

1
Transcriptomics and differential gene expression in (Annelida: Clitellata: Hirudinida: Hirudinidae): Contrasting feeding and fasting modes.蛭纲(环节动物门:寡毛纲:蛭目:水蛭科)的转录组学与差异基因表达:摄食与禁食模式的对比
Ecol Evol. 2019 Mar 18;9(8):4706-4719. doi: 10.1002/ece3.5074. eCollection 2019 Apr.
2
[Cloning of Guamerin gene in Whitmania pigra and its spatio-temporal expression analysis after ingestion].蚂蟥古马素基因的克隆及其摄食后的时空表达分析
Zhongguo Zhong Yao Za Zhi. 2018 Sep;43(18):3605-3610. doi: 10.19540/j.cnki.cjcmm.20180703.003.
3
Life without blood: Molecular and functional analysis of hirudins and hirudin-like factors of the Asian non-hematophagous leech Whitmania pigra.无血液的生命:亚洲非吸血蛭Whitmania pigra 的水蛭素和水蛭素样因子的分子和功能分析。
J Thromb Haemost. 2022 Aug;20(8):1808-1817. doi: 10.1111/jth.15762. Epub 2022 May 30.
4
The complete mitochondrial genome sequence of Whitmania pigra (Annelida, Hirudinea): the first representative from the class Hirudinea.宽体金线蛭(环节动物门,蛭纲)的完整线粒体基因组序列:来自蛭纲的第一个代表。
Comp Biochem Physiol Part D Genomics Proteomics. 2011 Jun;6(2):133-8. doi: 10.1016/j.cbd.2010.12.001. Epub 2010 Dec 15.
5
Diversity and selective pressures of anticoagulants in three medicinal leeches (Hirudinida: Hirudinidae, Macrobdellidae).三种医用水蛭(医蛭目:医蛭科、巨蛭科)中抗凝血剂的多样性和选择压力。
Ecol Evol. 2013 Apr;3(4):918-33. doi: 10.1002/ece3.480. Epub 2013 Mar 5.
6
The energy metabolism of the freshwater leech Whitmania pigra in response to fasting.淡水医蛭 Whitmania pigra 对禁食的能量代谢反应。
Comp Biochem Physiol B Biochem Mol Biol. 2024 Oct-Dec;274:110999. doi: 10.1016/j.cbpb.2024.110999. Epub 2024 Jun 7.
7
Draft genome of the European medicinal leech Hirudo medicinalis (Annelida, Clitellata, Hirudiniformes) with emphasis on anticoagulants.欧洲医用水蛭 Hirudo medicinalis(环节动物门,蛭纲,水蛭目)基因组草图,重点关注抗凝血剂。
Sci Rep. 2020 Jun 18;10(1):9885. doi: 10.1038/s41598-020-66749-5.
8
The Origin and Evolution of Antistasin-like Proteins in Leeches (Hirudinida, Clitellata).水蛭(蛭形目,环节动物)抗凝血酶蛋白样蛋白的起源与进化。
Genome Biol Evol. 2021 Jan 7;13(1). doi: 10.1093/gbe/evaa242.
9
The genome of medicinal leech (Whitmania pigra) and comparative genomic study for exploration of bioactive ingredients.医用水蛭(Whitmania pigra)基因组及其生物活性成分的比较基因组学研究。
BMC Genomics. 2022 Jan 24;23(1):76. doi: 10.1186/s12864-022-08290-5.
10
[Study on correlation of oxygen consumption rate and suffocation point of Whitmania pigra and Bellamya purificata and optimum way of feeding Whitmania pigra].蚂蟥与福寿螺耗氧率和窒息点的相关性及蚂蟥最佳投喂方式的研究
Zhongguo Zhong Yao Za Zhi. 2016 Aug;41(15):2790-2793. doi: 10.4268/cjcmm20161507.

引用本文的文献

1
Characterization of the natural peptidome of four leeches by integrated proteogenomics and pseudotargeted peptidomics.通过整合蛋白质基因组学和伪靶向肽组学对四种水蛭的天然肽组进行表征。
Anal Bioanal Chem. 2023 Jun;415(14):2795-2807. doi: 10.1007/s00216-023-04692-w. Epub 2023 May 3.
2
Division of developmental phases of freshwater leech Whitmania pigra and key genes related to neurogenesis revealed by whole genome and transcriptome analysis.通过全基因组和转录组分析揭示了淡水医蛭 Whitmania pigra 的发育阶段划分和与神经发生相关的关键基因。
BMC Genomics. 2023 Apr 17;24(1):203. doi: 10.1186/s12864-023-09286-5.
3
The genome of medicinal leech (Whitmania pigra) and comparative genomic study for exploration of bioactive ingredients.

本文引用的文献

1
Worms that suck: Phylogenetic analysis of Hirudinea solidifies the position of Acanthobdellida and necessitates the dissolution of Rhynchobdellida.吸血虫:舌蛭目的系统发育分析巩固了吻蛭目的地位,并使吻蛭目的解体成为必要。
Mol Phylogenet Evol. 2018 Oct;127:129-134. doi: 10.1016/j.ympev.2018.05.001. Epub 2018 May 17.
2
Comparative transcriptomic analysis reveals the mechanism of leech environmental adaptation.比较转录组学分析揭示了水蛭环境适应的机制。
Gene. 2018 Jul 20;664:70-77. doi: 10.1016/j.gene.2018.04.063. Epub 2018 Apr 22.
3
Marine Leech Anticoagulant Diversity and Evolution.
医用水蛭(Whitmania pigra)基因组及其生物活性成分的比较基因组学研究。
BMC Genomics. 2022 Jan 24;23(1):76. doi: 10.1186/s12864-022-08290-5.
4
Draft genome of the European medicinal leech Hirudo medicinalis (Annelida, Clitellata, Hirudiniformes) with emphasis on anticoagulants.欧洲医用水蛭 Hirudo medicinalis(环节动物门,蛭纲,水蛭目)基因组草图,重点关注抗凝血剂。
Sci Rep. 2020 Jun 18;10(1):9885. doi: 10.1038/s41598-020-66749-5.
5
European Medicinal Leeches-New Roles in Modern Medicine.欧洲医用水蛭——现代医学中的新角色
Biomedicines. 2020 Apr 27;8(5):99. doi: 10.3390/biomedicines8050099.
6
Hirudins of the Asian medicinal leech, Hirudinaria manillensis: same same, but different.亚洲医用水蛭,宽体金线蛭( Hirudinaria manillensis )中的水蛭素:大同小异。
Parasitol Res. 2019 Jul;118(7):2223-2233. doi: 10.1007/s00436-019-06365-z. Epub 2019 Jun 11.
海洋水蛭抗凝剂的多样性与进化
J Parasitol. 2018 Jun;104(3):210-220. doi: 10.1645/17-64. Epub 2018 Mar 16.
4
A Kolmogorov-Smirnov test for the molecular clock based on Bayesian ensembles of phylogenies.基于系统发育贝叶斯集合的分子钟的柯尔莫哥洛夫-斯米尔诺夫检验。
PLoS One. 2018 Jan 4;13(1):e0190826. doi: 10.1371/journal.pone.0190826. eCollection 2018.
5
Comparative Transcriptomic Analyses of Three Species of Placobdella (Rhynchobdellida: Glossiphoniidae) Confirms a Single Origin of Blood Feeding in Leeches.三种石蛭(吻蛭目:舌蛭科)的比较转录组分析证实水蛭吸血起源单一。
J Parasitol. 2016 Feb;102(1):143-50. doi: 10.1645/15-802. Epub 2015 Nov 4.
6
Anticoagulants for acute ischaemic stroke.急性缺血性卒中的抗凝剂
Cochrane Database Syst Rev. 2015 Mar 12;2015(3):CD000024. doi: 10.1002/14651858.CD000024.pub4.
7
Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering.功能基因网络:用于生成和分析源自功能富集与聚类的基因网络的R/Bioc软件包。
Bioinformatics. 2015 May 15;31(10):1686-8. doi: 10.1093/bioinformatics/btu864. Epub 2015 Jan 18.
8
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.使用DESeq2对RNA测序数据的倍数变化和离散度进行适度估计。
Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8.
9
Diversity and selective pressures of anticoagulants in three medicinal leeches (Hirudinida: Hirudinidae, Macrobdellidae).三种医用水蛭(医蛭目:医蛭科、巨蛭科)中抗凝血剂的多样性和选择压力。
Ecol Evol. 2013 Apr;3(4):918-33. doi: 10.1002/ece3.480. Epub 2013 Mar 5.
10
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.