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用于与侧翼脯氨酸残基进行蛋白质剪接的工程化DnaX内含肽。

Engineered DnaX inteins for protein splicing with flanking proline residues.

作者信息

Zhang Xiao, Liu Xiang-Qin, Meng Qing

机构信息

Institute of Biological Sciences and Biotechnology, Donghua University, Shanghai, People's Republic of China.

Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.

出版信息

Saudi J Biol Sci. 2019 May;26(4):854-859. doi: 10.1016/j.sjbs.2017.07.010. Epub 2017 Jul 22.

DOI:10.1016/j.sjbs.2017.07.010
PMID:31049014
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6486613/
Abstract

Inteins are internal protein sequences capable of catalyzing a protein splicing reaction by self-excising from a precursor protein and simultaneously joining the flanking sequences with a peptide bond. Split inteins have separate pieces (N-intein and C-intein) that reassemble non-covalently to catalyze a protein -splicing reaction joining two polypeptides. Protein splicing has become increasingly useful tools in many fields of biological research and biotechnology. However, natural and engineered inteins have failed previously to function when being flanked by proline residue at the -1 or +2 positions, which limits general uses of inteins. In this study, different engineered inteins were tested. We found that engineered DnaX mini-intein and split inteins could carry out protein splicing with proline at the +2 positions or at both -1 and +2 positions. Under conditions in cells, the mini-intein, S1 split intein, and S11 split intein spliced efficiently, whereas the S0 split intein did not splice with proline at both -1 and +2 positions. The S1 and S11 split inteins also -spliced efficiently with proline at the +2 positions or at both -1 and +2 positions, but the S0 split intein -spliced inefficiently with proline at the +2 position and did not -splice with proline at both -1 and +2 positions. These findings contribute significantly to the toolbox of intein-based technologies by allowing the use of inteins in proteins having proline at the splicing point.

摘要

内含肽是能够通过从前体蛋白中自我切割并同时将侧翼序列以肽键连接的方式催化蛋白质剪接反应的内部蛋白质序列。分裂内含肽具有单独的片段(N-内含肽和C-内含肽),它们非共价重新组装以催化连接两个多肽的蛋白质剪接反应。蛋白质剪接已成为生物研究和生物技术许多领域中越来越有用的工具。然而,天然和工程化的内含肽先前在-1或+2位置侧翼为脯氨酸残基时无法发挥功能,这限制了内含肽的广泛应用。在本研究中,对不同的工程化内含肽进行了测试。我们发现工程化的DnaX微型内含肽和分裂内含肽能够在+2位置或-1和+2位置同时存在脯氨酸的情况下进行蛋白质剪接。在细胞内条件下,微型内含肽、S1分裂内含肽和S11分裂内含肽剪接效率高,而S0分裂内含肽在-1和+2位置同时存在脯氨酸时不进行剪接。S1和S11分裂内含肽在+2位置或-1和+2位置同时存在脯氨酸时也能高效剪接,但S0分裂内含肽在+2位置与脯氨酸的剪接效率低,在-1和+2位置同时存在脯氨酸时不进行剪接。这些发现通过允许在剪接位点含有脯氨酸的蛋白质中使用内含肽,为基于内含肽的技术工具箱做出了重大贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/7fd380042aba/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/3f610de95786/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/7814dc97f454/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/791e0383108a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/7fd380042aba/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/3f610de95786/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/7814dc97f454/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/791e0383108a/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4851/6486613/7fd380042aba/gr4.jpg

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本文引用的文献

1
Faster protein splicing with the Nostoc punctiforme DnaE intein using non-native extein residues.使用非天然外显肽残基实现更快的蓝藻 punctiforme DnaE 内含肽蛋白剪接。
J Biol Chem. 2013 Mar 1;288(9):6202-11. doi: 10.1074/jbc.M112.433094. Epub 2013 Jan 10.
2
Highly efficient and more general cis- and trans-splicing inteins through sequential directed evolution.通过连续定向进化实现高效且更通用的顺式和反式剪接内含子。
J Biol Chem. 2011 Sep 30;286(39):34440-7. doi: 10.1074/jbc.M111.277350. Epub 2011 Aug 8.
3
Photocontrol of protein activity mediated by the cleavage reaction of a split intein.
由分裂内含肽的切割反应介导的蛋白质活性的光控
Angew Chem Int Ed Engl. 2011 Mar 28;50(14):3249-52. doi: 10.1002/anie.201007078. Epub 2011 Mar 7.
4
Protein C-terminal labeling and biotinylation using synthetic peptide and split-intein.使用合成肽和分裂内含肽进行蛋白质 C 端标记和生物素化。
PLoS One. 2009 Dec 21;4(12):e8381. doi: 10.1371/journal.pone.0008381.
5
Split inteins as versatile tools for protein semisynthesis.分裂内含肽作为蛋白质半合成的通用工具。
Chembiochem. 2009 Nov 2;10(16):2579-89. doi: 10.1002/cbic.200900370.
6
Semisynthesis of proteins using split inteins.利用分裂内含肽进行蛋白质的半合成
Methods Enzymol. 2009;462:77-96. doi: 10.1016/S0076-6879(09)62004-8.
7
Segmental isotopic labeling of a central domain in a multidomain protein by protein trans-splicing using only one robust DnaE intein.仅使用一种强大的DnaE内含肽,通过蛋白质反式剪接对多结构域蛋白质中的中央结构域进行片段同位素标记。
Angew Chem Int Ed Engl. 2009;48(33):6128-31. doi: 10.1002/anie.200901488.
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Modulation of intein activity by its neighboring extein substrates.内含肽活性受其相邻外显肽底物的调控。
Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11005-10. doi: 10.1073/pnas.0904366106. Epub 2009 Jun 17.
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