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胆汁分离菌株352的全基因组序列

Complete genome sequence of bile-isolated strain 352.

作者信息

Yu Tao, Li Lixiang, Zhao Qilin, Wang Peng, Zuo Xiuli

机构信息

1Department of Gastroenterology, Qilu Hospital, Shandong University, 107 Wenhuaxi Road, Jinan, 250012 Shandong People's Republic of China.

2Laboratory of Translational Gastroenterology, Qilu Hospital, Shandong University, Jinan, 250012 People's Republic of China.

出版信息

Gut Pathog. 2019 Apr 24;11:16. doi: 10.1186/s13099-019-0294-9. eCollection 2019.

Abstract

BACKGROUND

is a Gram-positive pathogenic bacterium belonging to the family can cause bacteremia, peritonitis, and intracranial suppurative infection. However, the mechanism of its pathogenesis and its adaptation to a special niche is still unclear.

RESULTS

In this study, the strain 352 was isolated from human bile and whole genome sequencing was performed. The strain 352 consists of a circular 4,794,392 bp chromosome as well as an 87,705 bp plasmid. The GC content of the chromosome is 38.98%. There are 4905 and 99 protein coding sequences in the chromosome and the plasmid, respectively. The genome of the strain 352 contains number of genes reported to be associated with bile adaption, including bsh, , , , galU, and . There are also several virulence-associated genes including , , , , , , , , and .

CONCLUSIONS

This study demonstrates the presence of various virulence factors of the strain 352, which has the potential to cause infections. Moreover, the genes involved in bile adaption might contribute to its ability to live in bile. Further comparative genomic studies would help to elucidate the evolution of pathogenesis of .

摘要

背景

[细菌名称]是一种革兰氏阳性病原菌,属于[菌属名称]科,可引起菌血症、腹膜炎和颅内化脓性感染。然而,其发病机制及其对特殊生态位的适应性仍不清楚。

结果

在本研究中,从人胆汁中分离出[细菌名称]菌株352,并进行了全基因组测序。[细菌名称]菌株352由一个4,794,392 bp的环状染色体和一个87,705 bp的质粒组成。染色体的GC含量为38.98%。染色体和质粒中分别有4905个和99个蛋白质编码序列。[细菌名称]菌株352的基因组包含许多据报道与胆汁适应性相关的基因,包括bsh、[其他基因名称1]、[其他基因名称2]、[其他基因名称3]、galU和[其他基因名称4]。也有几个与毒力相关的基因,包括[毒力相关基因名称1]、[毒力相关基因名称2]、[毒力相关基因名称3]、[毒力相关基因名称4]、[毒力相关基因名称5]、[毒力相关基因名称6]、[毒力相关基因名称7]、[毒力相关基因名称8]和[毒力相关基因名称9]。

结论

本研究证明了[细菌名称]菌株352存在多种毒力因子,具有引起感染的潜力。此外,参与胆汁适应的基因可能有助于其在胆汁中生存的能力。进一步的比较基因组研究将有助于阐明[细菌名称]发病机制的演变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54e1/6480912/0daa603c6b7c/13099_2019_294_Fig1_HTML.jpg

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