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皮肤组学,即表皮分子与结构生物学的转录谱分析方法。

Skinomics, transcriptional profiling approaches to molecular and structural biology of epidermis.

作者信息

Blumenberg Miroslav

机构信息

Department of Dermatology, NYU School of Medicine, New York, NY. Miroslav.Blumenberg@nyumc. org.

出版信息

Semin Cutan Med Surg. 2019 Mar 1;38(1):E12-E18. doi: 10.12788/j.sder.2019.004.

Abstract

Skinomics is a field of bioinformatics applied specifically to skin biology and, by extension, to dermatology. Skinomics has been expanding into extensive genome-wide association studies, eg, of psoriasis, proteomics, lipidomics, metabolomics, metagenomics, and the studies of the microbiome. Here, the current state of the field of transcriptomics is reviewed, including the studies of the gene expression in human skin under several healthy and disease conditions. Specifically, transcriptional studies of epidermal differentiation, skin aging, effects of cytokines, inflammation with emphases on psoriasis and atopic dermatitis, and wound healing are reviewed. The transition from microarrays to NextGen sequencing is noted and potential future directions suggested.

摘要

皮肤组学是生物信息学的一个领域,专门应用于皮肤生物学,并由此扩展到皮肤病学。皮肤组学已扩展到广泛的全基因组关联研究,例如银屑病、蛋白质组学、脂质组学、代谢组学、宏基因组学以及微生物组研究。在此,本文综述了转录组学领域的当前状态,包括在几种健康和疾病状态下人类皮肤中基因表达的研究。具体而言,对表皮分化、皮肤衰老、细胞因子的作用、以银屑病和特应性皮炎为重点的炎症以及伤口愈合的转录研究进行了综述。文中指出了从微阵列到新一代测序的转变,并提出了潜在的未来发展方向。

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