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Mutplot:一个易于使用的在线工具,用于灵活地绘制复杂的突变数据。

Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibility.

机构信息

Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, Nebraska.

出版信息

PLoS One. 2019 May 15;14(5):e0215838. doi: 10.1371/journal.pone.0215838. eCollection 2019.

Abstract

With the development of technology, an enormous amount of sequencing data is being generated rapidly. However, transforming this data into patient care is a critical challenge. There are two difficulties: how to integrate functional information into mutation interpretation and how to make the integration easy to apply. One solution is to visualize amino acid changes with protein structure and function in web app platform. There are multiple existing tools for plotting mutations, but the majority of them requires programming skills that are not common background for clinicians or researchers. Furthermore, the recurrent mutations are the focus and the recurrence cutoff varies. Yet, none of the current software offers customer-defined cutoff. Thus, we developed this user-friendly web-based tool, Mutplot (https://bioinformaticstools.shinyapps.io/lollipop/). Mutplot retrieves up-to-date domain information from the protein resource UniProt (https://www.uniprot.org/), integrates the submitted mutation information and produces lollipop diagrams with annotations and highlighted candidates. It offers flexible output options. For data that follows security standards, the app can also be hosted in web servers inside a firewall or computers without internet with Uniprot database stored on them. Altogether, Mutplot is an excellent tool for visualizing protein mutations, especially for clinicians or researchers without any bioinformatics background.

摘要

随着技术的发展,大量的测序数据正在迅速产生。然而,将这些数据转化为患者护理是一个关键的挑战。有两个困难:如何将功能信息整合到突变解释中,以及如何使整合变得易于应用。一种解决方案是在网络应用程序平台上将氨基酸变化与蛋白质结构和功能可视化。有多个现有的用于绘制突变的工具,但大多数工具都需要编程技能,而这些技能并不是临床医生或研究人员的常见背景。此外,复发性突变是重点,而且复发性截断值也不同。然而,目前没有任何软件提供客户定义的截断值。因此,我们开发了这个用户友好的基于网络的工具,Mutplot(https://bioinformaticstools.shinyapps.io/lollipop/)。Mutplot 从蛋白质资源 UniProt(https://www.uniprot.org/)中检索最新的域信息,整合提交的突变信息,并生成带有注释和突出显示候选的棒棒糖图。它提供了灵活的输出选项。对于符合安全标准的数据,该应用程序也可以在防火墙内的网络服务器或没有互联网的计算机中托管,同时在其上存储 UniProt 数据库。总之,Mutplot 是一个用于可视化蛋白质突变的优秀工具,特别是对于没有任何生物信息学背景的临床医生或研究人员。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a03/6519802/004692822b65/pone.0215838.g001.jpg

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