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一种针对 BK 病毒的通用治疗性疫苗设计的免疫信息学方法。

An immunoinformatic approach to universal therapeutic vaccine design against BK virus.

机构信息

Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE 68198, USA.

Creighton University School of Dentistry, Department of Oral Biology, Omaha, NE 68178, USA.

出版信息

Vaccine. 2019 Jun 6;37(26):3457-3463. doi: 10.1016/j.vaccine.2019.04.096. Epub 2019 May 13.

DOI:10.1016/j.vaccine.2019.04.096
PMID:31097352
Abstract

In kidney transplant recipients (KTRs) long-term immunosuppression leads to BK virus (BKV) reactivation, with an increased incidence of BKV-associated pathologies and allograft rejection. The current approaches to limit BKV infection include a reduction in immunosuppression and use of anti-BKV drugs, which are clinically sub-optimal and lead to undesirable therapeutic outcomes. Here, we adopted an immune-based approach to augment the endogenous BKV specific T-cells. Using reverse vaccinology based in silico analyses, we designed a peptide-based multi-epitope vaccine for BKV (MVBKV). A major advantage of our approach is that the selected epitopes show an affinity towards all the 12 superfamilies of HLA class I alleles and 27 reference alleles of HLA class II. This suggests MVBKV's universal nature and its potential effectiveness in a wide-population base. To improve MVBKV's immunogenic properties, a synthetic Toll-like Receptor (TLR) 4 peptide ligand (RS09) was added to the final vaccine construct. The sequences of the individual epitopes were molecularly linked to form a 3D-stable synthetic protein. Overall, our immunoinformatic-based approach led to the design of a new MVBKV vaccine, which remains to be validated experimentally.

摘要

在肾移植受者(KTR)中,长期免疫抑制会导致 BK 病毒(BKV)重新激活,从而增加 BKV 相关病变和同种异体移植物排斥的发生率。目前限制 BKV 感染的方法包括减少免疫抑制和使用抗 BKV 药物,但这些方法在临床上并不理想,导致治疗效果不理想。在这里,我们采用了一种基于免疫的方法来增强内源性 BKV 特异性 T 细胞。我们使用基于反向疫苗学的计算机分析设计了一种用于 BKV(MVBKV)的基于肽的多表位疫苗。我们方法的一个主要优势是,所选表位对所有 12 个 HLA Ⅰ类等位基因超家族和 27 个 HLA Ⅱ类参考等位基因具有亲和力。这表明 MVBKV 具有普遍性,并且有可能在广泛的人群基础上发挥作用。为了提高 MVBKV 的免疫原性,在最终疫苗构建体中添加了一种合成的 Toll 样受体(TLR)4 肽配体(RS09)。各个表位的序列通过分子链接形成 3D 稳定的合成蛋白。总的来说,我们基于免疫信息学的方法导致了一种新的 MVBKV 疫苗的设计,该疫苗仍有待实验验证。

相似文献

1
An immunoinformatic approach to universal therapeutic vaccine design against BK virus.一种针对 BK 病毒的通用治疗性疫苗设计的免疫信息学方法。
Vaccine. 2019 Jun 6;37(26):3457-3463. doi: 10.1016/j.vaccine.2019.04.096. Epub 2019 May 13.
2
In silico design and evaluation of a novel mRNA vaccine against BK virus: a reverse vaccinology approach.基于反向疫苗学的新型 BK 病毒 mRNA 疫苗的设计与评价。
Immunol Res. 2023 Jun;71(3):422-441. doi: 10.1007/s12026-022-09351-3. Epub 2022 Dec 29.
3
Interplay of cellular and humoral immune responses against BK virus in kidney transplant recipients with polyomavirus nephropathy.肾移植受者多瘤病毒肾病中针对BK病毒的细胞免疫和体液免疫反应的相互作用
J Virol. 2006 Apr;80(7):3495-505. doi: 10.1128/JVI.80.7.3495-3505.2006.
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HLA mismatching increases the risk of BK virus nephropathy in renal transplant recipients.HLA错配会增加肾移植受者发生BK病毒肾病的风险。
Am J Transplant. 2004 Oct;4(10):1691-6. doi: 10.1111/j.1600-6143.2004.00563.x.
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Nucleic Acid Tests for BK Polyomavirus Is Critical in Renal Transplant Recipients.对肾移植受者进行BK多瘤病毒核酸检测至关重要。
Transplant Proc. 2018 Oct;50(8):2489-2492. doi: 10.1016/j.transproceed.2018.03.100. Epub 2018 Mar 20.
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HLA-A01-, -A03-, and -A024-binding nanomeric epitopes in polyomavirus BK large T antigen.多瘤病毒 BK 大 T 抗原中 HLA-A01-、-A03- 和 -A024 结合的纳米表位。
Hum Immunol. 2009 Sep;70(9):722-8. doi: 10.1016/j.humimm.2009.05.003. Epub 2009 May 14.
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BK virus infection in transplant recipients: clinical manifestations, treatment options and the immune response.移植受者中的BK病毒感染:临床表现、治疗选择及免疫反应
Neth J Med. 2012 May;70(4):172-83.
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Different behaviour of BK-virus infection in liver transplant recipients.BK病毒感染在肝移植受者中的不同表现。
World J Gastroenterol. 2016 Jan 28;22(4):1532-40. doi: 10.3748/wjg.v22.i4.1532.
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BK Virus Infection in Thai Kidney Transplant Recipients: A Single-Center Experience.泰国肾移植受者中的BK病毒感染:单中心经验
Transplant Proc. 2018 May;50(4):1077-1079. doi: 10.1016/j.transproceed.2018.02.047.
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Ciprofloxacin prophylaxis in kidney transplant recipients reduces BK virus infection at 3 months but not at 1 year.环丙沙星预防治疗可降低肾移植受者在 3 个月时的 BK 病毒感染,但不能降低 1 年时的感染。
Transplantation. 2012 Dec 15;94(11):1117-23. doi: 10.1097/TP.0b013e31826ec74e.

引用本文的文献

1
Immunoinformatic exploration of a multi-epitope-based peptide vaccine candidate targeting emerging variants of SARS-CoV-2.针对严重急性呼吸综合征冠状病毒2(SARS-CoV-2)新出现变体的基于多表位肽疫苗候选物的免疫信息学探索。
Front Microbiol. 2023 Oct 17;14:1251716. doi: 10.3389/fmicb.2023.1251716. eCollection 2023.
2
In silico design and evaluation of a novel mRNA vaccine against BK virus: a reverse vaccinology approach.基于反向疫苗学的新型 BK 病毒 mRNA 疫苗的设计与评价。
Immunol Res. 2023 Jun;71(3):422-441. doi: 10.1007/s12026-022-09351-3. Epub 2022 Dec 29.
3
Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer.
诱导尿路上皮中的 APOBEC3 介导的基因组损伤提示 BK 多瘤病毒 (BKPyV) 是膀胱癌的一个一过性驱动因素。
Oncogene. 2022 Apr;41(15):2139-2151. doi: 10.1038/s41388-022-02235-8. Epub 2022 Feb 22.
4
BK Polyomavirus Nephropathy in Kidney Transplantation: Balancing Rejection and Infection.BK 多瘤病毒肾病在肾移植中的应用:平衡排斥和感染。
Viruses. 2021 Mar 16;13(3):487. doi: 10.3390/v13030487.
5
Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approaches.基于 SARS-COV-2 的新一代多表位疫苗(MEV)的设计:免疫信息学和计算机模拟方法。
PLoS One. 2020 Dec 22;15(12):e0244176. doi: 10.1371/journal.pone.0244176. eCollection 2020.
6
Multiepitope-Based Subunit Vaccine Design and Evaluation against Respiratory Syncytial Virus Using Reverse Vaccinology Approach.基于多表位的亚单位疫苗设计及应用反向疫苗学方法针对呼吸道合胞病毒的评估
Vaccines (Basel). 2020 Jun 8;8(2):288. doi: 10.3390/vaccines8020288.