从金矿土壤中分离出的韩国假单胞菌AB36菌株的基因组序列草图
Draft Genome Sequence of Pseudomonas koreensis Strain AB36, Isolated from Gold Mining Soil.
作者信息
Babalola Olubukola Oluranti, Ayangbenro Ayansina Segun
机构信息
Food Security and Safety Niche, Faculty of Natural and Agricultural Sciences, North-West University, Mmabatho, South Africa
Food Security and Safety Niche, Faculty of Natural and Agricultural Sciences, North-West University, Mmabatho, South Africa.
出版信息
Microbiol Resour Announc. 2019 May 16;8(20):e00175-19. doi: 10.1128/MRA.00175-19.
Abstract
Here, we report the draft genome sequence of strain AB36, isolated from gold mining soil in South Africa. The draft sequence consists of 5,902,614 bp, with a G+C content of 60.1% and 5,242 protein-coding genes. The genome provides insight into its metabolism and the degradation of environmental pollutants.
摘要
在此，我们报告从南非金矿土壤中分离出的AB36菌株的基因组序列草图。该草图序列由5,902,614个碱基对组成，G+C含量为60.1%，含有5,242个蛋白质编码基因。该基因组有助于深入了解其代谢以及环境污染物的降解情况。
相似文献
1
Draft Genome Sequence of Pseudomonas koreensis Strain AB36, Isolated from Gold Mining Soil.从金矿土壤中分离出的韩国假单胞菌AB36菌株的基因组序列草图
Microbiol Resour Announc. 2019 May 16;8(20):e00175-19. doi: 10.1128/MRA.00175-19.
2
Draft genome sequence of the strain 16-537536, isolated from a patient with bronchiectasis and its relationship to the Pseudomonas koreensis group of the Pseudomonas fluorescens complex.从一名支气管扩张患者分离出的16-537536菌株的基因组序列草图及其与荧光假单胞菌复合体中韩国假单胞菌组的关系。
BMC Res Notes. 2020 Jan 6;13(1):10. doi: 10.1186/s13104-019-4863-2.
3
Draft genome sequence of a cold-adapted phosphorous-solubilizing P2 isolated from Sela Lake, India.从印度塞拉湖分离出的冷适应解磷P2的基因组序列草图
3 Biotech. 2019 Jul;9(7):256. doi: 10.1007/s13205-019-1784-7. Epub 2019 Jun 8.
4
Draft Genome Sequence of Pseudomonas sp. Strain CCA1, Isolated from Leaf Soil.从叶际土壤中分离出的假单胞菌属菌株CCA1的基因组序列草图
Genome Announc. 2016 Dec 8;4(6):e01371-16. doi: 10.1128/genomeA.01371-16.
5
Draft Genome Sequence of Pseudomonas aeruginosa KF702 (NBRC 110665), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解菌铜绿假单胞菌KF702（NBRC 110665）的基因组序列草图
Genome Announc. 2015 May 21;3(3):e00517-15. doi: 10.1128/genomeA.00517-15.
6
Draft Genome Sequence of Pseudomonas abietaniphila KF701 (NBRC110664), a Polychlorinated Biphenyl-Degrading Bacterium Isolated from Biphenyl-Contaminated Soil.从联苯污染土壤中分离出的多氯联苯降解细菌阿比蒂假单胞菌KF701（NBRC110664）的基因组序列草图
Genome Announc. 2015 May 14;3(3):e00473-15. doi: 10.1128/genomeA.00473-15.
7
Draft genome sequence of Pseudomonas moraviensis strain Devor implicates metabolic versatility and bioremediation potential.摩拉维亚假单胞菌菌株Devor的基因组序列草图揭示了其代谢多样性和生物修复潜力。
Genom Data. 2016 Aug 4;9:154-9. doi: 10.1016/j.gdata.2016.08.004. eCollection 2016 Sep.
8
Potential use of Pseudomonas koreensis AGB-1 in association with Miscanthus sinensis to remediate heavy metal(loid)-contaminated mining site soil.韩国假单胞菌AGB-1与芒草联合用于修复重金属（类金属）污染矿区土壤的潜在用途。
J Environ Manage. 2015 Mar 15;151:160-6. doi: 10.1016/j.jenvman.2014.12.045. Epub 2015 Jan 7.
9
Genome Sequence of Pseudomonas sp. Strain LAP_36, A Rhizosphere Bacterium Isolated from King George Island, Antarctica.假单胞菌属菌株LAP_36的基因组序列，该菌株是从南极乔治王岛分离出的一种根际细菌。
Microbiol Resour Announc. 2021 Dec 2;10(48):e0073121. doi: 10.1128/MRA.00731-21.
10
Bioflocculant production and heavy metal sorption by metal resistant bacterial isolates from gold mining soil.从金矿土壤中分离出的耐金属细菌对生物絮凝剂的产生和重金属吸附作用。
Chemosphere. 2019 Sep;231:113-120. doi: 10.1016/j.chemosphere.2019.05.092. Epub 2019 May 15.
引用本文的文献
1
Draft genome sequence of active gold mine isolate strain ABS_30.活性金矿分离菌株ABS_30的基因组序列草图
Microbiol Resour Announc. 2023 Dec 14;12(12):e0084923. doi: 10.1128/MRA.00849-23. Epub 2023 Nov 15.
2
Whole-Genome Sequencing of Pseudomonas koreensis Isolated from Diseased Tor tambroides.从患病的波纹唇鱼中分离出的朝鲜假单胞菌的全基因组测序。
Curr Microbiol. 2023 Jun 25;80(8):255. doi: 10.1007/s00284-023-03354-5.
3
Human milk microbiome is shaped by breastfeeding practices.母乳微生物群受到母乳喂养方式的影响。
Front Microbiol. 2022 Sep 8;13:885588. doi: 10.3389/fmicb.2022.885588. eCollection 2022.
本文引用的文献
1
Draft Genome Sequence of Heavy Metal-Resistant Bacillus cereus NWUAB01.重金属抗性蜡样芽孢杆菌NWUAB01的基因组序列草图
Microbiol Resour Announc. 2019 Feb 14;8(7). doi: 10.1128/MRA.01706-18. eCollection 2019 Feb.
2
Complete Genome Sequence of the Soil Bacterium Strain 46-2.土壤细菌菌株46-2的全基因组序列
Microbiol Resour Announc. 2018 Nov 29;7(21). doi: 10.1128/MRA.01161-18. eCollection 2018 Nov.
3
RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
4
Draft Genome Sequence of CI12, a "Hitchhiker" from the Soybean Rhizosphere.CI12的基因组草图序列，一种来自大豆根际的“搭便车者”。
Genome Announc. 2017 Jun 29;5(26):e00570-17. doi: 10.1128/genomeA.00570-17.
5
antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters.antiSMASH 3.0——用于生物合成基因簇基因组挖掘的综合资源。
Nucleic Acids Res. 2015 Jul 1;43(W1):W237-43. doi: 10.1093/nar/gkv437. Epub 2015 May 6.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
8
DNA sequence-based analysis of the Pseudomonas species.基于 DNA 序列的假单胞菌属分析。
Environ Microbiol. 2010 Jun;12(6):1513-30. doi: 10.1111/j.1462-2920.2010.02181.x. Epub 2010 Feb 25.
9
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
Zotero 插件