Agglutinin-Like Sequence () Genes in the Species Complex: Blurring the Boundaries Between Gene Families That Encode Cell-Wall Proteins.

The agglutinin-like sequence (Als) proteins are best-characterized in and known for their role in adhesion of the fungal cell to host and abiotic surfaces. sequences are often misassembled in whole-genome sequence data because each species has multiple loci that contain similar sequences, most notably tandem copies of highly conserved repeated sequences. The species complex includes , , and , three distinct but closely related species. Using publicly available genome resources, genome assemblies, and laboratory experimentation including Sanger sequencing, five genes were characterized in strain CDC317, three in strain 90-125, and four in strain ATCC 96143. The newly characterized genes shared similar features with the well-known family, but also displayed unique attributes such as novel short, imperfect repeat sequences that were found in other genes encoding fungal cell-wall proteins. Evidence of recombination between sequences and other genes was most obvious in , which had the 5' end of an gene and the repeated sequences and 3' end from the family. Together, these results blur the boundaries between the fungal cell-wall families that were defined in . TaqMan assays were used to quantify relative expression for each gene. Some measurements were complicated by the assay location within the gene. Considerable variation was noted in relative gene expression for isolates of the same species. Overall, however, there was a trend toward higher relative gene expression in saturated cultures rather than younger cultures. This work provides a complete description of the genes in the species complex and a toolkit that promotes further investigations into the role of the Als proteins in host-fungal interactions.