Department of Microbiology and Molecular Genetics, University of Vermont Larner College of Medicine, Burlington, Vermont, USA.
Biotechnology and Bioengineering Department, Sandia National Laboratories, Livermore, California, USA.
J Bacteriol. 2019 Jul 10;201(15). doi: 10.1128/JB.00074-19. Print 2019 Aug 1.
is a Gram-negative opportunistic pathogen that can infect the lungs of people with cystic fibrosis (CF). The highly viscous mucus in the CF lung, expectorated as sputum, serves as the primary nutrient source for microbes colonizing this site and induces virulence-associated phenotypes and gene expression in several CF pathogens. Here, we characterized the transcriptional responses of three strains during exposure to synthetic CF sputum medium (SCFM2) to gain insight into how this organism interacts with the host in the CF lung. These efforts led to the identification of 881 transcripts differentially expressed by all three strains, many of which reflect the metabolic pathways used by in sputum, as well as altered stress responses. The latter correlated with increased resistance to peroxide exposure after pregrowth in SCFM2 for two of the strains. We also compared the SCFM2 transcriptomes of two CF isolates to that of the acute infection strain, K279a, allowing us to identify CF isolate-specific signatures in differential gene expression. The expression of genes from the accessory genomes was also differentially altered in response to SCFM2. Finally, a number of biofilm-associated genes were differentially induced in SCFM2, particularly in K279a, which corresponded to increased aggregation and biofilm formation in this strain relative to both CF strains. Collectively, this work details the response of to an environment that mimics important aspects of the CF lung, identifying potential survival strategies and metabolic pathways used by during infections. is an important infecting bacterium in the airways of people with cystic fibrosis (CF). However, compared to the other CF pathogens, has been relatively understudied. The significance of our research is to provide insight into the global transcriptomic changes of in response to a medium that was designed to mimic important aspects of the CF lung. This study elucidates the overall metabolic changes that occur when encounters the CF lung and generates a road map of candidate genes to test using and models of CF.
是一种革兰氏阴性机会性病原体,可以感染囊性纤维化(CF)患者的肺部。CF 肺部高度粘稠的粘液,作为痰被咳出,是定植在该部位的微生物的主要营养来源,并诱导几种 CF 病原体的毒力相关表型和基因表达。在这里,我们描述了三种 菌株在暴露于合成 CF 痰培养基(SCFM2)时的转录反应,以深入了解该生物体如何在 CF 肺部与宿主相互作用。这些努力导致鉴定了所有三种菌株差异表达的 881 个转录本,其中许多反映了 在痰中的代谢途径,以及改变的应激反应。后两者与两种 在 SCFM2 中预生长后对过氧化物暴露的抵抗力增加有关。我们还比较了两种 CF 分离株与急性感染株 K279a 的 SCFM2 转录组,使我们能够识别差异基因表达中的 CF 分离株特异性特征。辅助基因组的基因表达也因 SCFM2 而发生差异改变。最后,许多生物膜相关基因在 SCFM2 中差异诱导,特别是在 K279a 中,与该菌株相对于两种 CF 菌株的聚集和生物膜形成增加相对应。总的来说,这项工作详细描述了 对模仿 CF 肺部重要方面的环境的反应,确定了 在感染过程中使用的潜在生存策略和代谢途径。 是囊性纤维化(CF)患者气道中一种重要的感染细菌。然而,与其他 CF 病原体相比, 相对研究较少。我们研究的意义在于深入了解 对模仿 CF 肺部重要方面的培养基的全球转录组变化。这项研究阐明了当 遇到 CF 肺部时发生的整体代谢变化,并为使用 和 CF 模型测试候选基因生成了路线图。