Suppr超能文献

一次只前进一步,然后再退一步:同源重组过程中的可逆性。

Moving forward one step back at a time: reversibility during homologous recombination.

机构信息

Spatial Regulation of Genomes, Institut Pasteur, CNRS, UMR3525, 28 Rue du Docteur Roux, 75015, Paris, France.

Department of Microbiology and Molecular Genetics, University of California, Davis, One Shields Ave, Davis, CA, 95616, USA.

出版信息

Curr Genet. 2019 Dec;65(6):1333-1340. doi: 10.1007/s00294-019-00995-7. Epub 2019 May 23.

Abstract

DNA double-strand breaks are genotoxic lesions whose repair can be templated off an intact DNA duplex through the conserved homologous recombination (HR) pathway. Because it mainly consists of a succession of non-covalent associations of molecules, HR is intrinsically reversible. Reversibility serves as an integral property of HR, exploited and tuned at various stages throughout the pathway with anti- and pro-recombinogenic consequences. Here, we focus on the reversibility of displacement loops (D-loops), a central DNA joint molecule intermediate whose dynamics and regulation have recently been physically probed in somatic S. cerevisiae cells. From homology search to repair completion, we discuss putative roles of D-loop reversibility in repair fidelity and outcome.

摘要

DNA 双链断裂是遗传毒性损伤,其修复可以通过保守的同源重组 (HR) 途径在完整的 DNA 双链模板上进行。由于 HR 主要由分子的一系列非共价结合组成,因此它本质上是可逆的。可逆性是 HR 的一个固有特性,在整个途径的各个阶段都被利用和调整,具有抗重组和促进重组的后果。在这里,我们关注的是置换环 (D-loops) 的可逆性,D-loops 是一种中央 DNA 连接分子中间体,其动力学和调节最近在体细胞酿酒酵母细胞中得到了物理探测。从同源搜索到修复完成,我们讨论了 D-loop 可逆性在修复保真度和结果中的可能作用。

相似文献

1
Moving forward one step back at a time: reversibility during homologous recombination.
Curr Genet. 2019 Dec;65(6):1333-1340. doi: 10.1007/s00294-019-00995-7. Epub 2019 May 23.
2
Biochemical Analysis of D-Loop Extension and DNA Strand Displacement Synthesis.
Methods Mol Biol. 2021;2153:87-99. doi: 10.1007/978-1-0716-0644-5_7.
5
Mechanics and Single-Molecule Interrogation of DNA Recombination.
Annu Rev Biochem. 2016 Jun 2;85:193-226. doi: 10.1146/annurev-biochem-060614-034352. Epub 2016 Apr 18.
6
Monitoring homology search during DNA double-strand break repair in vivo.
Mol Cell. 2013 Apr 25;50(2):261-72. doi: 10.1016/j.molcel.2013.02.020. Epub 2013 Mar 21.
7
DNA damage tolerance by recombination: Molecular pathways and DNA structures.
DNA Repair (Amst). 2016 Aug;44:68-75. doi: 10.1016/j.dnarep.2016.05.008. Epub 2016 May 16.
9
Pathways and assays for DNA double-strand break repair by homologous recombination.
Acta Biochim Biophys Sin (Shanghai). 2019 Sep 6;51(9):879-889. doi: 10.1093/abbs/gmz076.
10
The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments.
Nature. 2003 May 15;423(6937):309-12. doi: 10.1038/nature01585.

引用本文的文献

1
Donor transcription suppresses D-loops in cis and promotes genome stability.
EMBO J. 2025 Aug 26. doi: 10.1038/s44318-025-00541-x.
4
The translocation activity of Rad54 reduces crossover outcomes during homologous recombination.
Nucleic Acids Res. 2024 Jul 8;52(12):7031-7048. doi: 10.1093/nar/gkae474.
5
All who wander are not lost: the search for homology during homologous recombination.
Biochem Soc Trans. 2024 Feb 28;52(1):367-377. doi: 10.1042/BST20230705.
6
Modeling the Homologous Recombination Process: Methods, Successes and Challenges.
Int J Mol Sci. 2023 Oct 4;24(19):14896. doi: 10.3390/ijms241914896.
7
Practical Approaches for the Yeast Genome Modification.
Int J Mol Sci. 2023 Jul 26;24(15):11960. doi: 10.3390/ijms241511960.
8
Delineation of two multi-invasion-induced rearrangement pathways that differently affect genome stability.
Genes Dev. 2023 Jul 1;37(13-14):621-639. doi: 10.1101/gad.350618.123. Epub 2023 Aug 4.
9
Amyloid-like Hfq interaction with single-stranded DNA: involvement in recombination and replication in .
QRB Discov. 2022 Sep 7;3:e15. doi: 10.1017/qrd.2022.15. eCollection 2022.
10
Delineation of two multi-invasion-induced rearrangement pathways that differently affect genome stability.
bioRxiv. 2023 Mar 16:2023.03.15.532751. doi: 10.1101/2023.03.15.532751.

本文引用的文献

1
Helicase Mechanisms During Homologous Recombination in .
Annu Rev Biophys. 2019 May 6;48:255-273. doi: 10.1146/annurev-biophys-052118-115418. Epub 2019 Mar 11.
3
Dynamic Processing of Displacement Loops during Recombinational DNA Repair.
Mol Cell. 2019 Mar 21;73(6):1255-1266.e4. doi: 10.1016/j.molcel.2019.01.005. Epub 2019 Feb 5.
4
Homologous Recombination and the Formation of Complex Genomic Rearrangements.
Trends Cell Biol. 2019 Feb;29(2):135-149. doi: 10.1016/j.tcb.2018.10.006. Epub 2018 Nov 26.
5
Keep moving and stay in a good shape to find your homologous recombination partner.
Curr Genet. 2019 Feb;65(1):29-39. doi: 10.1007/s00294-018-0873-1. Epub 2018 Aug 10.
6
53BP1-RIF1-shieldin counteracts DSB resection through CST- and Polα-dependent fill-in.
Nature. 2018 Aug;560(7716):112-116. doi: 10.1038/s41586-018-0324-7. Epub 2018 Jul 18.
7
Chromatin mobility upon DNA damage: state of the art and remaining questions.
Curr Genet. 2019 Feb;65(1):1-9. doi: 10.1007/s00294-018-0852-6. Epub 2018 Jun 8.
8
Homologous recombination and the repair of DNA double-strand breaks.
J Biol Chem. 2018 Jul 6;293(27):10524-10535. doi: 10.1074/jbc.TM118.000372. Epub 2018 Mar 29.
9
Multi-Invasion-Induced Rearrangements as a Pathway for Physiological and Pathological Recombination.
Bioessays. 2018 May;40(5):e1700249. doi: 10.1002/bies.201700249. Epub 2018 Mar 26.
10
Break-induced replication promotes formation of lethal joint molecules dissolved by Srs2.
Nat Commun. 2017 Nov 27;8(1):1790. doi: 10.1038/s41467-017-01987-2.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验