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机械化学转化。

Mechanochemistry in Translation.

机构信息

Department of Chemistry , Pennsylvania State University , University Park , Pennsylvania 16802 , United States.

Department of Physiology , University of Pennsylvania , Philadelphia , Pennsylvania 19104 , United States.

出版信息

Biochemistry. 2019 Nov 26;58(47):4657-4666. doi: 10.1021/acs.biochem.9b00260. Epub 2019 Jun 11.

Abstract

As the influence of translation rates on protein folding and function has come to light, the mechanisms by which translation speed is modulated have become an important issue. One mechanism entails the generation of force by the nascent protein. Cotranslational processes, such as nascent protein folding, the emergence of unfolded nascent chain segments from the ribosome's exit tunnel, and insertion of the nascent chain into or translocation of the nascent chain through membranes, can generate forces that are transmitted back to the peptidyl transferase center and affect translation rates. In this Perspective, we examine the processes that generate these forces, the mechanisms of transmission along the ribosomal exit tunnel to the peptidyl transferase center, and the effects of force on the ribosome's catalytic cycle. We also discuss the physical models that have been developed to predict and explain force generation for individual processes and speculate about other processes that may generate forces that have yet to be tested.

摘要

随着翻译速率对蛋白质折叠和功能的影响逐渐被揭示,调节翻译速度的机制已成为一个重要问题。一种机制涉及新生蛋白质产生力。共翻译过程,如新生蛋白质折叠、核糖体出口隧道中未折叠新生链段的出现,以及新生链的插入或通过膜的易位,都可以产生力,这些力被传递回肽基转移酶中心,并影响翻译速度。在这篇观点文章中,我们研究了产生这些力的过程、沿核糖体出口隧道传递到肽基转移酶中心的机制,以及力对核糖体催化循环的影响。我们还讨论了已经开发的物理模型,这些模型用于预测和解释单个过程中的力产生,并推测可能产生尚未经过测试的力的其他过程。

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本文引用的文献

1
Multicolor Mechanochromic Polymer Blends That Can Discriminate between Stretching and Grinding.
ACS Macro Lett. 2018 May 15;7(5):556-560. doi: 10.1021/acsmacrolett.8b00224. Epub 2018 Apr 20.
2
Mechanochemical Activation of Covalent Bonds in Polymers with Full and Repeatable Macroscopic Shape Recovery.
ACS Macro Lett. 2014 Mar 18;3(3):216-219. doi: 10.1021/mz500031q. Epub 2014 Feb 12.
3
Domain topology, stability, and translation speed determine mechanical force generation on the ribosome.
Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5523-5532. doi: 10.1073/pnas.1813003116. Epub 2019 Mar 1.
4
Cotranslational Folding of a Pentarepeat β-Helix Protein.
J Mol Biol. 2018 Dec 7;430(24):5196-5206. doi: 10.1016/j.jmb.2018.10.016. Epub 2018 Oct 27.
6
The entropic force generated by intrinsically disordered segments tunes protein function.
Nature. 2018 Nov;563(7732):584-588. doi: 10.1038/s41586-018-0699-5. Epub 2018 Nov 12.
7
Folding pathway of an Ig domain is conserved on and off the ribosome.
Proc Natl Acad Sci U S A. 2018 Nov 27;115(48):E11284-E11293. doi: 10.1073/pnas.1810523115. Epub 2018 Nov 9.
8
Forces on Nascent Polypeptides during Membrane Insertion and Translocation via the Sec Translocon.
Biophys J. 2018 Nov 20;115(10):1885-1894. doi: 10.1016/j.bpj.2018.10.002. Epub 2018 Oct 10.
9
Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome.
J Mol Biol. 2018 Dec 7;430(24):5207-5216. doi: 10.1016/j.jmb.2018.10.011. Epub 2018 Oct 23.
10
Effects of protein size, thermodynamic stability, and net charge on cotranslational folding on the ribosome.
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):E9280-E9287. doi: 10.1073/pnas.1812756115. Epub 2018 Sep 17.

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