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被困于蒙脱石纳米黏土中的益生元汤成分形成新分子:卡-帕里尼罗从头算模拟

Prebiotic Soup Components Trapped in Montmorillonite Nanoclay Form New Molecules: Car-Parrinello Ab Initio Simulations.

作者信息

Carrascoza Mayén Juan Francisco, Rydzewski Jakub, Szostak Natalia, Blazewicz Jacek, Nowak Wieslaw

机构信息

Institute of Computer Science, Poznan University of Technology, 60-965 Poznan, Poland.

European Center for Bioinformatics and Genomics, Poznan University of Technology, 60-965 Poznan, Poland.

出版信息

Life (Basel). 2019 Jun 4;9(2):46. doi: 10.3390/life9020046.

DOI:10.3390/life9020046
PMID:31167366
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6617125/
Abstract

The catalytic effects of complex minerals or meteorites are often mentioned as important factors for the origins of life. To assess the possible role of nanoconfinement within a catalyst consisting of montmorillonite (MMT) and the impact of local electric field on the formation efficiency of the simple hypothetical precursors of nucleic acid bases or amino acids, we performed ab initio Car-Parrinello molecular dynamics simulations. We prepared four condensed-phase systems corresponding to previously suggested prototypes of a primordial soup. We monitored possible chemical reactions occurring within gas-like bulk and MMT-confined four simulation boxes on a 20-ps time scale at 1 atm and 300 K, 400 K, and 600 K. Elevated temperatures did not affect the reactivity of the elementary components of the gas-like boxes considerably; however, the presence of the MMT nanoclay substantially increased the formation probability of new molecules. Approximately 20 different new compounds were found in boxes containing carbon monoxide or formaldehyde molecules. This observation and an analysis of the atom-atom radial distribution functions indicated that the presence of Ca ions at the surface of the internal MMT cavities may be an important factor in the initial steps of the formation of complex molecules at the early stages of the Earth's history.

摘要

复杂矿物质或陨石的催化作用常被提及为生命起源的重要因素。为了评估由蒙脱石(MMT)构成的催化剂内纳米限域的可能作用以及局部电场对核酸碱基或氨基酸简单假设前体形成效率的影响,我们进行了从头算Car-Parrinello分子动力学模拟。我们制备了四个对应于先前提出的原始汤原型的凝聚相系统。我们在1个大气压以及300 K、400 K和600 K的温度下,在20皮秒的时间尺度上监测了类气态主体和MMT限域的四个模拟盒内可能发生的化学反应。升高的温度对类气态盒基本成分的反应活性影响不大;然而,MMT纳米黏土的存在显著提高了新分子的形成概率。在含有一氧化碳或甲醛分子的盒子中发现了大约20种不同的新化合物。这一观察结果以及对原子-原子径向分布函数的分析表明,内部MMT空腔表面钙离子的存在可能是地球历史早期复杂分子形成初始步骤中的一个重要因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/789a06c1e0a2/life-09-00046-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/cbb51bf76360/life-09-00046-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/c0e239db1679/life-09-00046-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/e1bfd37001c5/life-09-00046-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/758ca6de9564/life-09-00046-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/789a06c1e0a2/life-09-00046-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/cbb51bf76360/life-09-00046-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/c0e239db1679/life-09-00046-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/e1bfd37001c5/life-09-00046-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/758ca6de9564/life-09-00046-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3851/6617125/789a06c1e0a2/life-09-00046-g005.jpg

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