Suppr超能文献

白屈菜酸氢键介导的复合振动结构的实验、密度泛函理论二聚体建模及分子中的原子研究

Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid.

作者信息

Malaganvi Shivanand S, Tonannavar Yenagi Jayashree, Tonannavar J

机构信息

Vibrational Spectroscopy Group, Department of Physics, Karnatak University, Dharwad, 580 003, India.

出版信息

Heliyon. 2019 May 14;5(5):e01586. doi: 10.1016/j.heliyon.2019.e01586. eCollection 2019 May.

Abstract

The composite vibrational structure near 3650-3200 and 3000-2400 cm in the observed IR absorption spectrum of Chelidonic acid has been explained in terms of - and -molecular -O-H∙∙∙O H-bonding attributed to monomer and dimer species computed at B3LYP/6-311++G(d,p) level. Three of the six dimer species derived out of ten monomeric components have shown both - and -molecular H-bonding. Vibrational modes of the monomer and dimer species are satisfactorily identified with the observed IR and Raman bands including frequency shifts associated with the H-bondings. The H-bond interactions in the monomer and dimer species have been characterized in terms of electron density, ρ(), its Laplacian, ∇ρ() and potential energy density at the O∙∙∙H bond critical points (BCPs) based on the Atoms in Molecules (AIM) theory. The attractive (van der Waals, H-bonds) and repulsive steric clash (SC) interactions are explained using computed reduced density gradient values from the noncovalent interaction (NCI) method. The AIM analysis confirms the presence of the - and -molecular H-bondings in the monomer/dimer species. The natural bond orbital (NBO) analysis of the natural charges and stabilization energy of the H-bonds for the dimer species further points to the stronger -than -molecular H-bonding.

摘要

在白屈菜酸的红外吸收光谱中,3650 - 3200 cm⁻¹和3000 - 2400 cm⁻¹附近的复合振动结构已根据在B3LYP/6 - 311++G(d,p)水平计算的单体和二聚体物种的 - 和 - 分子 -O-H∙∙∙O氢键进行了解释。从十个单体组分衍生出的六个二聚体物种中的三个显示出 - 和 - 分子氢键。单体和二聚体物种的振动模式与观察到的红外和拉曼光谱带(包括与氢键相关的频率位移)得到了令人满意的识别。基于分子中的原子(AIM)理论,在O∙∙∙H键临界点(BCP)处,根据电子密度ρ(r)、其拉普拉斯算子∇²ρ(r)和势能密度对单体和二聚体物种中的氢键相互作用进行了表征。使用从非共价相互作用(NCI)方法计算得到的约化密度梯度值来解释吸引性(范德华力、氢键)和排斥性空间冲突(SC)相互作用。AIM分析证实了单体/二聚体物种中 - 和 - 分子氢键的存在。对二聚体物种氢键的自然电荷和稳定能进行的自然键轨道(NBO)分析进一步表明 - 分子氢键比 - 分子氢键更强。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/17a0/6522660/344b3a16199a/gr1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验