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用超快力钳光谱法测量单个蛋白质在DNA上进行靶标搜索的数据。

Data on the target search by a single protein on DNA measured with ultrafast force-clamp spectroscopy.

作者信息

Monico Carina, Tempestini Alessia, Gardini Lucia, Pavone Francesco Saverio, Capitanio Marco

机构信息

LENS - European Laboratory for Non-linear Spectroscopy, Via Nello Carrara 1, 50019, Sesto Fiorentino, Italy.

National Institute of Optics-National Research Council, Largo Fermi 6, 50125, Florence, Italy.

出版信息

Data Brief. 2019 Apr 28;24:103918. doi: 10.1016/j.dib.2019.103918. eCollection 2019 Jun.

Abstract

The mechanism by which proteins are able to find small cognate sequences in the range from few to few tens of base pairs amongst the millions of non-specific chromosomal DNA has been puzzling researchers for decades. Single molecule techniques based on fluorescence have been successfully applied to investigate this process but are inherently limited in terms of spatial and temporal resolution. We previously showed that ultrafast force-clamp spectroscopy, a single molecule technique based on laser tweezers, can be applied to the study of protein-DNA interaction attaining sub-millisecond and few base-pair resolution. Here, we share experimental records of interactions between a single lactose repressor protein and DNA collected under different forces using our technique [1]. The data can be valuable for researchers interested in the study of protein-DNA interaction and the mechanism of DNA target search, both from an experimental and modeling point of view. The data is related to the research article "" [2].

摘要

几十年来,蛋白质如何在数百万个非特异性染色体DNA中找到少数到几十对碱基对范围内的小同源序列,这一机制一直困扰着研究人员。基于荧光的单分子技术已成功应用于研究这一过程,但在空间和时间分辨率方面存在固有局限性。我们之前表明,超快力钳光谱技术,一种基于激光镊子的单分子技术,可应用于蛋白质 - DNA相互作用的研究,实现亚毫秒和几个碱基对的分辨率。在这里,我们分享使用我们的技术在不同力下收集的单个乳糖阻遏蛋白与DNA之间相互作用的实验记录[1]。从实验和建模的角度来看,这些数据对于对蛋白质 - DNA相互作用和DNA靶标搜索机制研究感兴趣的研究人员可能很有价值。这些数据与研究文章“”[2]相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/df8e/6526245/f5a6f40bedf3/gr1.jpg

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