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作为研究蔷薇科根系共生关系的模型。

as a Model for Studying the Root Symbioses of the Rosaceae.

作者信息

Billault-Penneteau Benjamin, Sandré Aline, Folgmann Jessica, Parniske Martin, Pawlowski Katharina

机构信息

Institute of Genetics, Faculty of Biology, LMU Munich, Martinsried, Germany.

Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden.

出版信息

Front Plant Sci. 2019 Jun 4;10:661. doi: 10.3389/fpls.2019.00661. eCollection 2019.

Abstract

The nitrogen-fixing root nodule symbiosis is restricted to four plant orders: Fabales (legumes), Fagales, Cucurbitales and Rosales (Elaeagnaceae, Rhamnaceae, and Rosaceae). Interestingly all of the Rosaceae genera confirmed to contain nodulating species (i.e., , , , and ) belong to a single subfamily, the Dryadoideae. The genus is particularly interesting from an evolutionary perspective because it contains closely related nodulating ( and non-nodulating species (. The close phylogenetic relationship between these two species makes an ideal model genus to study the genetic basis of nodulation by whole genome comparison and classical genetics. Therefore, we established methods for plant cultivation, transformation and DNA extraction for these species. We optimized seed surface sterilization and germination methods and tested growth protocols ranging from pots and Petri dishes to a hydroponic system. Transgenic hairy roots were obtained by adapting -based transformation protocols for species. We compared several DNA extraction protocols for their suitability for subsequent molecular biological analysis. Using CTAB extraction, reproducible PCRs could be performed, but CsCl gradient purification was essential to obtain DNA in sufficient purity for high quality genome sequencing of both species. Altogether, we established a basic toolkit for the culture, transient transformation and genetic analysis of sp.

摘要

固氮根瘤共生仅限于四个植物目

豆目(豆科植物)、壳斗目、葫芦目和蔷薇目(胡颓子科、鼠李科和蔷薇科)。有趣的是,所有已确认含有结瘤物种(即 、 、 和 )的蔷薇科属都属于一个亚科,即棣棠亚科。从进化的角度来看, 属特别有趣,因为它包含密切相关的结瘤物种( 和 )以及非结瘤物种( )。这两个物种之间密切的系统发育关系使得 成为通过全基因组比较和经典遗传学研究结瘤遗传基础的理想模式属。因此,我们为这些物种建立了植物培养、转化和DNA提取方法。我们优化了种子表面消毒和萌发方法,并测试了从花盆、培养皿到水培系统等不同的生长方案。通过将基于 的转化方案应用于 物种获得了转基因毛状根。我们比较了几种DNA提取方案对后续分子生物学分析的适用性。使用CTAB提取法可以进行可重复的PCR,但CsCl梯度纯化对于获得足够纯度的DNA以进行两个 物种的高质量基因组测序至关重要。总之,我们为 属的培养、瞬时转化和遗传分析建立了一个基本工具包。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/006b/6558151/836f356e7275/fpls-10-00661-g001.jpg

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