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低剂量胸部 CT 扫描中的肺部血管分割和抑制。

Segmentation and suppression of pulmonary vessels in low-dose chest CT scans.

机构信息

School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.

Shanghai United Imaging Healthcare Co., Ltd., Shanghai, 201807, China.

出版信息

Med Phys. 2019 Aug;46(8):3603-3614. doi: 10.1002/mp.13648. Epub 2019 Jun 26.

Abstract

PURPOSE

The suppression of pulmonary vessels in chest computed tomography (CT) images can enhance the conspicuity of lung nodules, thereby improving the detection rate of early lung cancer. This study aimed to develop two key techniques in vessel suppression, that is, segmentation and removal of pulmonary vessels while preserving the nodules.

METHODS

Pulmonary vessel segmentation and removal methods in CT images were developed. The vessel segmentation method used a framework of two cascaded convolutional neural networks (CNNs). A bi-class segmentation network was utilized in the first step to extract high-intensity structures, including both vessels and nonvascular tissues such as nodules. A tri-class segmentation network was employed in the second step to distinguish the vessels from nonvascular tissues (mainly nodules) and the lung parenchyma. In the vessel removal method, the voxels in the segmented vessels were replaced with randomly selected voxels from the surrounding lung parenchyma. The dataset in this study comprised 50 three-dimensional (3D) low-dose chest CT images. The labels for vessel and nodule segmentation were annotated with a semi automatic approach. The two cascaded networks for pulmonary vessel segmentation were trained with CT images of 40 cases and tested with CT images of ten cases. Pulmonary vessels were removed from the ten testing scans based on the predicted segmentation results. In addition to qualitative evaluation to the effects of segmentation and removal, the segmentation results were quantitatively evaluated using Dice coefficient (DICE), Jaccard index (JAC), and volumetric similarity (VS) and the removal results were evaluated using contrast-to-noise ratio (CNR).

RESULTS

In the first step of vessel segmentation, the mean DICE, JAC, and VS for high-intensity tissues, including both vessels and nodules, were 0.943, 0.893, and 0.991, respectively. In the second step, all the nodules were separated from the vessels, and the mean DICE, JAC, and VS for the vessels were 0.941, 0.890, and 0.991, respectively. After vessel removal, the mean CNR for nodules was improved from 4.23 (6.26 dB) to 6.95 (8.42 dB).

CONCLUSIONS

Quantitative and qualitative evaluations demonstrated that the proposed method achieved a high accuracy for pulmonary vessel segmentation and a good effect on pulmonary vessel suppression.

摘要

目的

胸部计算机断层扫描(CT)图像中肺血管的抑制可以提高肺结节的显影,从而提高早期肺癌的检出率。本研究旨在开发血管抑制的两项关键技术,即在保留结节的同时分割和去除肺血管。

方法

开发了 CT 图像中肺血管分割和去除方法。血管分割方法使用两个级联卷积神经网络(CNN)框架。在第一步中,使用双类分割网络提取高强度结构,包括血管和非血管组织,如结节。在第二步中,使用三类分割网络将血管与非血管组织(主要是结节)和肺实质区分开来。在血管去除方法中,分割血管中的体素用来自周围肺实质的随机选择的体素替换。本研究数据集包括 50 个三维(3D)低剂量胸部 CT 图像。血管和结节分割的标签使用半自动方法进行注释。两个级联的肺血管分割网络使用 40 例 CT 图像进行训练,使用 10 例 CT 图像进行测试。根据预测的分割结果,从十次测试扫描中去除肺部血管。除了对分割和去除效果进行定性评估外,还使用 Dice 系数(DICE)、Jaccard 指数(JAC)和体积相似性(VS)对分割结果进行定量评估,并使用对比噪声比(CNR)对去除结果进行评估。

结果

在血管分割的第一步中,高强度组织(包括血管和结节)的平均 DICE、JAC 和 VS 分别为 0.943、0.893 和 0.991。在第二步中,所有结节均与血管分离,血管的平均 DICE、JAC 和 VS 分别为 0.941、0.890 和 0.991。血管去除后,结节的平均 CNR 从 4.23(6.26 dB)提高到 6.95(8.42 dB)。

结论

定量和定性评估表明,所提出的方法对肺血管分割具有较高的准确性,对肺血管抑制具有较好的效果。

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