从斑点叉尾鮰中分离出的柱状黄杆菌菌株ARS1和BGFS27的基因组序列草图。
Draft Genome Sequences of Flavobacterium columnare Strains ARS1 and BGFS27, Isolated from Channel Catfish ().
作者信息
Cai Wenlong, Arias C R
机构信息
School of Fisheries, Aquaculture, and Aquatic Sciences, Auburn University, Auburn, Alabama, USA
HOPLITE Research Group, Department of Pathology and Microbiology, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, PE, Canada.
出版信息
Microbiol Resour Announc. 2019 Jun 27;8(26):e00648-19. doi: 10.1128/MRA.00648-19.
Abstract
strain BGFS27 was isolated from an apparently healthy wild channel catfish () collected from the Mobile River in 2005. strain ARS1 was isolated from a channel catfish suffering from columnaris disease in a commercial farm in 1996. BGFS27 belongs to genomovar II (genetic group 2), while ARS1 belongs to genomovar III (genetic group 3). Here, we report the draft genome sequences of BGFS27 and ARS1, obtained by PacBio sequencing.
摘要
菌株BGFS27于2005年从莫比尔河采集的一条看似健康的野生斑点叉尾鮰中分离得到。菌株ARS1于1996年从一个商业养殖场患有柱状病的斑点叉尾鮰中分离得到。BGFS27属于基因组变种II（遗传组2），而ARS1属于基因组变种III（遗传组3）。在此，我们报告通过PacBio测序获得的BGFS27和ARS1的基因组草图序列。
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本文引用的文献
1
Characterization of atypical Flavobacterium columnare and identification of a new genomovar.
J Fish Dis. 2018 Jul;41(7):1159-1164. doi: 10.1111/jfd.12778. Epub 2018 Apr 26.
2
Identification of Four Distinct Phylogenetic Groups in With Fish Host Associations.
Front Microbiol. 2018 Mar 13;9:452. doi: 10.3389/fmicb.2018.00452. eCollection 2018.
3
Epidemiology of columnaris disease affecting fishes within the same watershed.
Dis Aquat Organ. 2014 Jul 3;109(3):201-11. doi: 10.3354/dao02739.
4
New attenuated vaccine against columnaris disease in fish: choosing the right parental strain is critical for vaccine efficacy.
Vaccine. 2013 Oct 25;31(45):5276-80. doi: 10.1016/j.vaccine.2013.08.052. Epub 2013 Sep 5.
5
Intragenomic heterogeneity in the 16S rRNA genes of Flavobacterium columnare and standard protocol for genomovar assignment.
J Fish Dis. 2014 Jul;37(7):657-69. doi: 10.1111/jfd.12166. Epub 2013 Aug 20.
6
Columnaris disease in fish: a review with emphasis on bacterium-host interactions.
Vet Res. 2013 Apr 24;44(1):27. doi: 10.1186/1297-9716-44-27.
7
Catfish hybrid Ictalurus punctatus × I. furcatus exhibits higher resistance to columnaris disease than the parental species.
Dis Aquat Organ. 2012 Aug 13;100(1):77-81. doi: 10.3354/dao02492.
8
Adhesion dynamics of Flavobacterium columnare to channel catfish Ictalurus punctatus and zebrafish Danio rerio after immersion challenge.
Dis Aquat Organ. 2011 Oct 6;96(3):221-7. doi: 10.3354/dao02371.
9
Development and characterization of rifampicin-resistant mutants from high virulent strains of Flavobacterium columnare.
J Fish Dis. 2011 May;34(5):385-94. doi: 10.1111/j.1365-2761.2011.01253.x.
10
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
BMC Bioinformatics. 2009 May 20;10:154. doi: 10.1186/1471-2105-10-154.
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