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酶促 Pictet-Spengler 反应:诺卡屈林合酶的机制和对映选择性的计算研究。

Enzymatic Pictet-Spengler Reaction: Computational Study of the Mechanism and Enantioselectivity of Norcoclaurine Synthase.

机构信息

Department of Organic Chemistry, Arrhenius Laboratory , Stockholm University , SE-10691 Stockholm , Sweden.

出版信息

J Am Chem Soc. 2019 Jul 17;141(28):11230-11238. doi: 10.1021/jacs.9b04591. Epub 2019 Jul 2.

Abstract

The Pictet-Spengler (PS) reaction, i.e., the acid-catalyzed condensation between β-arylethylamine and an aldehyde or a ketone and the subsequent ring closure, is an important reaction in organic chemistry. A number of enzymes (called Pictet-Spenglerases, PSases) have been identified to catalyze this reaction, usually with very high enantioselectivity, making these enzymes of potential value in biocatalysis. PSases catalyze the key step in the biosynthesis of indole and benzylisoquinoline alkaloids of plant origin, some of which have pharmacological importance. However, the reaction mechanisms and the origins of the selectivity are not fully understood. Herein, we report a quantum chemical investigation of the mechanism and enantioselectivity of norcoclaurine synthase (NCS), an enzyme that catalyzes the PS condensation between dopamine and 4-hydroxyphenylacetaldehyde (4-HPAA). A large model of the active site is designed on the basis of a recent crystal structure, and it is used to calculate the detailed energy profile of the reaction. Good agreement is obtained between the calculated energies and available experimental information. Both the "dopamine-first" and the "HPAA-first" binding modes of the substrates reported in the literature are shown to be energetically accessible in the enzyme-substrate complex. However, it is demonstrated that only the dopamine-first pathway is associated with feasible energy barriers. Key active site residues are identified, and their roles in the catalysis are discussed and compared to site-directed mutagenesis experiments. Very importantly, the calculations are able to reproduce and rationalize the observed enantioselectivity of NCS. A detailed analysis of the geometries of the intermediates and transition states helps to pinpoint the main factors controlling the selectivity.

摘要

Pictet-Spengler(PS)反应,即β-芳基乙胺与醛或酮在酸催化下的缩合以及随后的环化反应,是有机化学中的重要反应。已经鉴定出许多酶(称为Pictet-Spenglerases,PSases)来催化此反应,通常具有非常高的对映选择性,这使得这些酶在生物催化中具有潜在的价值。PSases 催化植物来源的吲哚和苄基异喹啉生物碱生物合成的关键步骤,其中一些具有药理学重要性。然而,反应机制和选择性的起源尚未完全了解。在此,我们报道了对催化多巴胺与 4-羟苯基乙醛(4-HPAA)之间 PS 缩合的酶——诺考来林合酶(NCS)的机制和对映选择性的量子化学研究。基于最近的晶体结构设计了一个大的活性位点模型,并用于计算反应的详细能量曲线。计算出的能量与可用的实验信息之间存在良好的一致性。文献中报道的“多巴胺优先”和“HPAA 优先”两种结合模式在酶-底物复合物中都显示出能量上是可行的。然而,证明只有多巴胺优先途径与可行的能量障碍相关。确定了关键的活性位点残基,并讨论了它们在催化中的作用,并与定点突变实验进行了比较。非常重要的是,计算能够重现和合理化 NCS 的观察到的对映选择性。对中间体和过渡态的几何形状的详细分析有助于确定控制选择性的主要因素。

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